RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 PJA1Q8NG27 643 aa12.68□□□□□ -0.38
LDLR-212ENST00000560467 TMC2Q8TDI7 906 aa12.68□□□□□ -0.38
LDLR-212ENST00000560467 FGF14Q92915 247 aa12.68□□□□□ -0.38
LDLR-212ENST00000560467 CCDC127Q96BQ5 260 aa12.68□□□□□ -0.38
LDLR-212ENST00000560467 SEMA4AQ9H3S1 761 aa12.68□□□□□ -0.38
LDLR-212ENST00000560467 RPF1Q9H9Y2 349 aaKnown RBP12.68□□□□□ -0.38
LDLR-212ENST00000560467 TOPORSQ9NS56 1045 aaPredicted RBP12.68□□□□□ -0.38
LDLR-212ENST00000560467 RBAKQ9NYW8 714 aaPredicted RBP12.68□□□□□ -0.38
LDLR-212ENST00000560467 PARP2Q9UGN5 583 aa12.68□□□□□ -0.38
LDLR-212ENST00000560467 FBXW11Q9UKB1 542 aa12.68□□□□□ -0.38
LDLR-212ENST00000560467 DNAH14Q0VDD8 3507 aa12.68□□□□□ -0.38
LDLR-212ENST00000560467 SF3B1O75533 1304 aaKnown RBP eCLIP12.67□□□□□ -0.38
LDLR-212ENST00000560467 A0A1W2PQC6 194 aa12.67□□□□□ -0.38
LDLR-212ENST00000560467 CCL16O15467 120 aa12.67□□□□□ -0.38
LDLR-212ENST00000560467 ADAM12O43184 909 aa12.67□□□□□ -0.38
LDLR-212ENST00000560467 PHACTR2O75167 634 aa12.67□□□□□ -0.38
LDLR-212ENST00000560467 TADA2AO75478 443 aa12.67□□□□□ -0.38
LDLR-212ENST00000560467 CLSTN1O94985 981 aa12.67□□□□□ -0.38
LDLR-212ENST00000560467 KIF4AO95239 1232 aa12.67□□□□□ -0.38
LDLR-212ENST00000560467 C1RP00736 705 aa12.67□□□□□ -0.38
LDLR-212ENST00000560467 DEKP35659 375 aaKnown RBP12.67□□□□□ -0.38
LDLR-212ENST00000560467 CASP4P49662 377 aa12.67□□□□□ -0.38
LDLR-212ENST00000560467 ACOT2P49753 483 aa12.67□□□□□ -0.38
LDLR-212ENST00000560467 GSDMDP57764 484 aa12.67□□□□□ -0.38
LDLR-212ENST00000560467 GPC5P78333 572 aa12.67□□□□□ -0.38
LDLR-212ENST00000560467 CREMQ03060 361 aa12.67□□□□□ -0.38
LDLR-212ENST00000560467 CYP24A1Q07973 514 aa12.67□□□□□ -0.38
LDLR-212ENST00000560467 ZC3H14Q6PJT7 736 aaKnown RBP12.67□□□□□ -0.38
LDLR-212ENST00000560467 GBP6Q6ZN66 633 aa12.67□□□□□ -0.38
LDLR-212ENST00000560467 DGLUCYQ7Z3D6 616 aa12.67□□□□□ -0.38
LDLR-212ENST00000560467 GPR65Q8IYL9 337 aa12.67□□□□□ -0.38
LDLR-212ENST00000560467 MAML2Q8IZL2 1156 aaPredicted RBP12.67□□□□□ -0.38
LDLR-212ENST00000560467 DCLK2Q8N568 766 aa12.67□□□□□ -0.38
LDLR-212ENST00000560467 CACTINQ8WUQ7 758 aaKnown RBP12.67□□□□□ -0.38
LDLR-212ENST00000560467 FAM212AQ96EL1 285 aa12.67□□□□□ -0.38
LDLR-212ENST00000560467 NAP1L5Q96NT1 182 aaPredicted RBP12.67□□□□□ -0.38
LDLR-212ENST00000560467 ACAP3Q96P50 834 aa12.67□□□□□ -0.38
LDLR-212ENST00000560467 CXCL16Q9H2A7 254 aa12.67□□□□□ -0.38
LDLR-212ENST00000560467 CDH7Q9ULB5 785 aa12.67□□□□□ -0.38
LDLR-212ENST00000560467 SPTBN2O15020 2390 aa12.66□□□□□ -0.38
LDLR-212ENST00000560467 DOCK8Q8NF50 2099 aa12.66□□□□□ -0.38
LDLR-212ENST00000560467 TTLL13PA6NNM8 815 aa12.66□□□□□ -0.38
LDLR-212ENST00000560467 TISP43B9A030 160 aa12.66□□□□□ -0.38
LDLR-212ENST00000560467 P4HA2O15460 535 aa12.66□□□□□ -0.38
LDLR-212ENST00000560467 C8AP07357 584 aa12.66□□□□□ -0.38
LDLR-212ENST00000560467 DLATP10515 647 aaKnown RBP12.66□□□□□ -0.38
LDLR-212ENST00000560467 TRIM21P19474 475 aaKnown RBP12.66□□□□□ -0.38
LDLR-212ENST00000560467 PROZP22891 400 aa12.66□□□□□ -0.38
LDLR-212ENST00000560467 PSMD6Q15008 389 aa12.66□□□□□ -0.38
LDLR-212ENST00000560467 PSMD5Q16401 504 aa12.66□□□□□ -0.38
LDLR-212ENST00000560467 LIN9Q5TKA1 542 aa12.66□□□□□ -0.38
LDLR-212ENST00000560467 SLC39A4Q6P5W5 647 aa12.66□□□□□ -0.38
LDLR-212ENST00000560467 TMC6Q7Z403 805 aa12.66□□□□□ -0.38
LDLR-212ENST00000560467 CEP57Q86XR8 500 aa12.66□□□□□ -0.38
LDLR-212ENST00000560467 CBWD2Q8IUF1 395 aa12.66□□□□□ -0.38
LDLR-212ENST00000560467 SPC24Q8NBT2 197 aa12.66□□□□□ -0.38
LDLR-212ENST00000560467 NEK11Q8NG66 645 aa12.66□□□□□ -0.38
LDLR-212ENST00000560467 ITFG1Q8TB96 612 aa12.66□□□□□ -0.38
LDLR-212ENST00000560467 ZBTB45Q96K62 511 aaPredicted RBP12.66□□□□□ -0.38
LDLR-212ENST00000560467 TSPAN18Q96SJ8 248 aa12.66□□□□□ -0.38
LDLR-212ENST00000560467 CLSTN3Q9BQT9 956 aa12.66□□□□□ -0.38
LDLR-212ENST00000560467 TTPALQ9BTX7 342 aa12.66□□□□□ -0.38
LDLR-212ENST00000560467 IKZF4Q9H2S9 585 aa12.66□□□□□ -0.38
LDLR-212ENST00000560467 PDZD7Q9H5P4 517 aa12.66□□□□□ -0.38
LDLR-212ENST00000560467 MMRN2Q9H8L6 949 aa12.66□□□□□ -0.38
LDLR-212ENST00000560467 PTPRHQ9HD43 1115 aa12.66□□□□□ -0.38
LDLR-212ENST00000560467 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.66□□□□□ -0.38
LDLR-212ENST00000560467 COL4A3Q01955 1670 aa12.66□□□□□ -0.38
LDLR-212ENST00000560467 EPG5Q9HCE0 2579 aa12.65□□□□□ -0.38
LDLR-212ENST00000560467 GTPBP10A4D1E9 387 aaKnown RBP12.65□□□□□ -0.38
LDLR-212ENST00000560467 PTGESO14684 152 aa12.65□□□□□ -0.38
LDLR-212ENST00000560467 XPOTO43592 962 aaKnown RBP12.65□□□□□ -0.38
LDLR-212ENST00000560467 TNNC2P02585 160 aa12.65□□□□□ -0.38
LDLR-212ENST00000560467 STARD6P59095 220 aa12.65□□□□□ -0.38
LDLR-212ENST00000560467 MYL7Q01449 175 aa12.65□□□□□ -0.38
LDLR-212ENST00000560467 TUSC3Q13454 348 aa12.65□□□□□ -0.38
LDLR-212ENST00000560467 EXOC3L4Q17RC7 722 aa12.65□□□□□ -0.38
LDLR-212ENST00000560467 DUOXA2Q1HG44 320 aa12.65□□□□□ -0.38
LDLR-212ENST00000560467 WDR44Q5JSH3 913 aa12.65□□□□□ -0.38
LDLR-212ENST00000560467 PPM1LQ5SGD2 360 aa12.65□□□□□ -0.38
LDLR-212ENST00000560467 FAM171A1Q5VUB5 890 aa12.65□□□□□ -0.38
LDLR-212ENST00000560467 KRT39Q6A163 491 aa12.65□□□□□ -0.38
LDLR-212ENST00000560467 CACNA2D4Q7Z3S7 1137 aa12.65□□□□□ -0.38
LDLR-212ENST00000560467 FMNL3Q8IVF7 1028 aa12.65□□□□□ -0.38
LDLR-212ENST00000560467 VSTM4Q8IW00 320 aa12.65□□□□□ -0.38
LDLR-212ENST00000560467 SUMF1Q8NBK3 374 aa12.65□□□□□ -0.38
LDLR-212ENST00000560467 LNX1Q8TBB1 728 aaPredicted RBP12.65□□□□□ -0.38
LDLR-212ENST00000560467 PIK3R5Q8WYR1 880 aa12.65□□□□□ -0.38
LDLR-212ENST00000560467 RUBCNQ92622 972 aa12.65□□□□□ -0.38
LDLR-212ENST00000560467 FGF13Q92913 245 aa12.65□□□□□ -0.38
LDLR-212ENST00000560467 SLC35C1Q96A29 364 aa12.65□□□□□ -0.38
LDLR-212ENST00000560467 FAM81BQ96LP2 452 aa12.65□□□□□ -0.38
LDLR-212ENST00000560467 KXD1Q9BQD3 176 aa12.65□□□□□ -0.38
LDLR-212ENST00000560467 IMPG2Q9BZV3 1241 aa12.65□□□□□ -0.38
LDLR-212ENST00000560467 CDT1Q9H211 546 aa12.65□□□□□ -0.38
LDLR-212ENST00000560467 PLEKHA5Q9HAU0 1116 aa12.65□□□□□ -0.38
LDLR-212ENST00000560467 ZNHIT6Q9NWK9 470 aaKnown RBP12.65□□□□□ -0.38
LDLR-212ENST00000560467 POLIQ9UNA4 740 aa12.65□□□□□ -0.38
LDLR-212ENST00000560467 USP20Q9Y2K6 914 aa12.65□□□□□ -0.38
LDLR-212ENST00000560467 MTF2Q9Y483 593 aaPredicted RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms