RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 CD302Q8IX05 232 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 EIF1ADQ8N9N8 165 aaKnown RBP10.23□□□□□ -0.77
CLIP1-212ENST00000540304 TMEM35BQ8NCS4 154 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 CXorf38Q8TB03 319 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 CASKIN2Q8WXE0 1202 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 KATNAL1Q9BW62 490 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 ZNF518BQ9C0D4 1074 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 VRTNQ9H8Y1 702 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 PCDHGC3Q9UN70 934 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 GINS2Q9Y248 185 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 PASKQ96RG2 1323 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 FAM155AB1AL88 458 aaPredicted RBP10.23□□□□□ -0.77
CLIP1-212ENST00000540304 H3BQF6 201 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 SNUPNO95149 360 aaKnown RBP10.23□□□□□ -0.77
CLIP1-212ENST00000540304 MYL3P08590 195 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 CORO7P57737 925 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 ADAM17P78536 824 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 LACTBP83111 547 aaPredicted RBP10.23□□□□□ -0.77
CLIP1-212ENST00000540304 AADACL2Q6P093 401 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 SLC27A1Q6PCB7 646 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 RUFY4Q6ZNE9 571 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 CATSPER4Q7RTX7 472 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 IFT81Q8WYA0 676 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.23□□□□□ -0.77
CLIP1-212ENST00000540304 PARVAQ9NVD7 372 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 AMACRQ9UHK6 382 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 ITGA11Q9UKX5 1188 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 NFU1Q9UMS0 254 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 TLL2Q9Y6L7 1015 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 SMAPO00193 183 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 PROSCO94903 275 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 NPTXRO95502 500 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 CALB1P05937 261 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 PAEPP09466 180 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 P4HA1P13674 534 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 DARSP14868 501 aaKnown RBP10.22□□□□□ -0.77
CLIP1-212ENST00000540304 EIF4BP23588 611 aaKnown RBP10.22□□□□□ -0.77
CLIP1-212ENST00000540304 POLR2BP30876 1174 aaKnown RBP10.22□□□□□ -0.77
CLIP1-212ENST00000540304 CDH5P33151 784 aaPredicted RBP10.22□□□□□ -0.77
CLIP1-212ENST00000540304 RAP1GAPP47736 663 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 MAMLD1Q13495 774 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 CUL1Q13616 776 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 LLGL1Q15334 1064 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 TRADDQ15628 312 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 FOXR1Q6PIV2 292 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 C1orf131Q8NDD1 294 aaKnown RBP10.22□□□□□ -0.77
CLIP1-212ENST00000540304 TFAP2BQ92481 460 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 N4BP2L2Q92802 583 aaPredicted RBP10.22□□□□□ -0.77
CLIP1-212ENST00000540304 CCDC102AQ96A19 550 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 OSMRQ99650 979 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 PLVAPQ9BX97 442 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 TRIM7Q9C029 511 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 PLEKHA5Q9HAU0 1116 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 CYP3A43Q9HB55 503 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 NR2E1Q9Y466 385 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 BHMG1C9JSJ3 638 aaPredicted RBP10.22□□□□□ -0.77
CLIP1-212ENST00000540304 MED7O43513 233 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 STAU1O95793 577 aaKnown RBP10.22□□□□□ -0.77
CLIP1-212ENST00000540304 PYGBP11216 843 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 PYGMP11217 842 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 HOXA11P31270 313 aaPredicted RBP10.22□□□□□ -0.77
CLIP1-212ENST00000540304 AARSP49588 968 aaKnown RBP eCLIP10.22□□□□□ -0.77
CLIP1-212ENST00000540304 RBP5P82980 135 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 BEX3Q00994 111 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 HIC1Q14526 733 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 FSCN1Q16658 493 aaKnown RBP10.22□□□□□ -0.77
CLIP1-212ENST00000540304 HSP90B2PQ58FF3 399 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 NOTUMQ6P988 496 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.22□□□□□ -0.77
CLIP1-212ENST00000540304 KIF12Q96FN5 646 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 HPDLQ96IR7 371 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 SDCBP2Q9H190 292 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 SMYD3Q9H7B4 428 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 ERVK-5Q9HDB9 667 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.22□□□□□ -0.77
CLIP1-212ENST00000540304 DPP3Q9NY33 737 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 AGAP1Q9UPQ3 857 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 DERAQ9Y315 318 aa10.22□□□□□ -0.77
CLIP1-212ENST00000540304 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.22□□□□□ -0.77
CLIP1-212ENST00000540304 TTI1O43156 1089 aa10.21□□□□□ -0.77
CLIP1-212ENST00000540304 PHF2O75151 1096 aa10.21□□□□□ -0.77
CLIP1-212ENST00000540304 AKR1A1P14550 325 aa10.21□□□□□ -0.77
CLIP1-212ENST00000540304 RAD23BP54727 409 aa10.21□□□□□ -0.77
CLIP1-212ENST00000540304 CDH8P55286 799 aa10.21□□□□□ -0.77
CLIP1-212ENST00000540304 USP4Q13107 963 aa10.21□□□□□ -0.77
CLIP1-212ENST00000540304 RBBP5Q15291 538 aaKnown RBP10.21□□□□□ -0.77
CLIP1-212ENST00000540304 PDCD2Q16342 344 aaPredicted RBP10.21□□□□□ -0.77
CLIP1-212ENST00000540304 SLC13A5Q86YT5 568 aaPredicted RBP10.21□□□□□ -0.77
CLIP1-212ENST00000540304 FEZF2Q8TBJ5 459 aa10.21□□□□□ -0.77
CLIP1-212ENST00000540304 WHAMMQ8TF30 809 aa10.21□□□□□ -0.77
CLIP1-212ENST00000540304 DNAJB3Q8WWF6 145 aa10.21□□□□□ -0.77
CLIP1-212ENST00000540304 FAM124BQ9H5Z6 455 aaPredicted RBP10.21□□□□□ -0.77
CLIP1-212ENST00000540304 CDHR5Q9HBB8 845 aa10.21□□□□□ -0.77
CLIP1-212ENST00000540304 MTUS1Q9ULD2 1270 aa10.21□□□□□ -0.77
CLIP1-212ENST00000540304 TRIP12Q14669 1992 aaPredicted RBP10.21□□□□□ -0.77
CLIP1-212ENST00000540304 TRIP11Q15643 1979 aa10.21□□□□□ -0.77
CLIP1-212ENST00000540304 TLR3O15455 904 aaKnown RBP10.21□□□□□ -0.78
CLIP1-212ENST00000540304 TREHO43280 583 aa10.21□□□□□ -0.78
CLIP1-212ENST00000540304 CD19P15391 556 aa10.21□□□□□ -0.78
CLIP1-212ENST00000540304 AXLP30530 894 aa10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms