RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 SEMA6BQ9H3T3 888 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 KBTBD4Q9NVX7 518 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 BAZ2BQ9UIF8 2168 aaKnown RBP13.76□□□□□ -0.21
TCOF1-213ENST00000514442 KIAA0391O15091 583 aaKnown RBP13.76□□□□□ -0.21
TCOF1-213ENST00000514442 EEF1DP29692 281 aaKnown RBP13.76□□□□□ -0.21
TCOF1-213ENST00000514442 PSMC6P62333 389 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 NOP14P78316 857 aaKnown RBP13.76□□□□□ -0.21
TCOF1-213ENST00000514442 COL9A3Q14050 684 aaPredicted RBP13.76□□□□□ -0.21
TCOF1-213ENST00000514442 TTI2Q6NXR4 508 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 SYDE1Q6ZW31 735 aaPredicted RBP13.76□□□□□ -0.21
TCOF1-213ENST00000514442 FBXO16Q8IX29 292 aaPredicted RBP13.76□□□□□ -0.21
TCOF1-213ENST00000514442 USP6NLQ92738 828 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 INPP5DQ92835 1189 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 FAM118BQ9BPY3 351 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 FAM49BQ9NUQ9 324 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 ERAP1Q9NZ08 941 aa13.76□□□□□ -0.21
TCOF1-213ENST00000514442 GRAP2O75791 330 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 APOEP02649 317 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 KRT16P08779 473 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 NCF2P19878 526 aaPredicted RBP13.75□□□□□ -0.21
TCOF1-213ENST00000514442 AP1B1Q10567 949 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 GIT2Q14161 759 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 LBRQ14739 615 aaKnown RBP13.75□□□□□ -0.21
TCOF1-213ENST00000514442 CNGA3Q16281 694 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 KLHL38Q2WGJ6 581 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 TMEM259Q4ZIN3 620 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 RABGAP1LQ5R372 815 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 COMMD3-BMI1R4GMX3 469 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 CYP2C9P11712 490 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 SOX10P56693 466 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 MAPK7Q13164 816 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 TAF1BQ53T94 588 aaPredicted RBP13.75□□□□□ -0.21
TCOF1-213ENST00000514442 NLRP9Q7RTR0 991 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 RIBC1Q8N443 379 aaPredicted RBP13.75□□□□□ -0.21
TCOF1-213ENST00000514442 EXT2Q93063 718 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 MCEEQ96PE7 176 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 RCCD1A6NED2 376 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 ZBBXA8MT70 800 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 B2RBV5 119 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 CPB1P15086 417 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 KDSRQ06136 332 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 GRIK3Q13003 919 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 C18orf8Q96DM3 657 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 TMEM237Q96Q45 408 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 NDNQ99608 321 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 TSSK1BQ9BXA7 367 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 MYLK2Q9H1R3 596 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 TMEM8AQ9HCN3 771 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 COPEO14579 308 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 ZBTB24O43167 697 aaPredicted RBP13.75□□□□□ -0.21
TCOF1-213ENST00000514442 CYTH3O43739 400 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 RARGP13631 454 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 IFI35P80217 286 aaPredicted RBP13.75□□□□□ -0.21
TCOF1-213ENST00000514442 RBP5P82980 135 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 XRRA1Q6P2D8 792 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 WDR75Q8IWA0 830 aaKnown RBP13.75□□□□□ -0.21
TCOF1-213ENST00000514442 GALNT15Q8N3T1 639 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 EFHD1Q9BUP0 239 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 OSBPL8Q9BZF1 889 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 ZCWPW1Q9H0M4 648 aa13.75□□□□□ -0.21
TCOF1-213ENST00000514442 ADARB2Q9NS39 739 aaKnown RBP13.75□□□□□ -0.21
TCOF1-213ENST00000514442 APOBEC2Q9Y235 224 aaKnown RBP13.75□□□□□ -0.21
TCOF1-213ENST00000514442 EPHB2P29323 1055 aa13.74□□□□□ -0.21
TCOF1-213ENST00000514442 SGSM1Q2NKQ1 1148 aa13.74□□□□□ -0.21
TCOF1-213ENST00000514442 CBWD2Q8IUF1 395 aa13.74□□□□□ -0.21
TCOF1-213ENST00000514442 ZBED8Q8IZ13 594 aa13.74□□□□□ -0.21
TCOF1-213ENST00000514442 ATP6V1E2Q96A05 226 aa13.74□□□□□ -0.21
TCOF1-213ENST00000514442 THTPAQ9BU02 230 aa13.74□□□□□ -0.21
TCOF1-213ENST00000514442 WWP1Q9H0M0 922 aa13.74□□□□□ -0.21
TCOF1-213ENST00000514442 EBF2Q9HAK2 575 aa13.74□□□□□ -0.21
TCOF1-213ENST00000514442 TMEM165Q9HC07 324 aa13.74□□□□□ -0.21
TCOF1-213ENST00000514442 EXTL3O43909 919 aa13.74□□□□□ -0.21
TCOF1-213ENST00000514442 UNC5CO95185 931 aa13.74□□□□□ -0.21
TCOF1-213ENST00000514442 ADARP55265 1226 aaKnown RBP13.74□□□□□ -0.21
TCOF1-213ENST00000514442 ROR1Q01973 937 aa13.74□□□□□ -0.21
TCOF1-213ENST00000514442 PDIA2Q13087 525 aaKnown RBP13.74□□□□□ -0.21
TCOF1-213ENST00000514442 WDR59Q6PJI9 974 aa13.74□□□□□ -0.21
TCOF1-213ENST00000514442 PPWD1Q96BP3 646 aaKnown RBP13.74□□□□□ -0.21
TCOF1-213ENST00000514442 CBWD1Q9BRT8 395 aa13.74□□□□□ -0.21
TCOF1-213ENST00000514442 MAGEB2O15479 319 aa13.74□□□□□ -0.21
TCOF1-213ENST00000514442 HBP1O60381 514 aa13.74□□□□□ -0.21
TCOF1-213ENST00000514442 IZUMO3Q5VZ72 239 aa13.74□□□□□ -0.21
TCOF1-213ENST00000514442 HEATR6Q6AI08 1181 aaKnown RBP13.74□□□□□ -0.21
TCOF1-213ENST00000514442 LRRC43Q8N309 656 aa13.74□□□□□ -0.21
TCOF1-213ENST00000514442 SYTL5Q8TDW5 730 aaPredicted RBP13.74□□□□□ -0.21
TCOF1-213ENST00000514442 PDCD6IPQ8WUM4 868 aaKnown RBP13.74□□□□□ -0.21
TCOF1-213ENST00000514442 PPP2R3CQ969Q6 453 aa13.74□□□□□ -0.21
TCOF1-213ENST00000514442 ZFYVE28Q9HCC9 887 aa13.74□□□□□ -0.21
TCOF1-213ENST00000514442 PXMP2Q9NR77 195 aa13.74□□□□□ -0.21
TCOF1-213ENST00000514442 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.74□□□□□ -0.21
TCOF1-213ENST00000514442 BTBD7Q9P203 1132 aa13.74□□□□□ -0.21
TCOF1-213ENST00000514442 A0A087X0B3 334 aa13.74□□□□□ -0.21
TCOF1-213ENST00000514442 S100BP04271 92 aaPredicted RBP13.74□□□□□ -0.21
TCOF1-213ENST00000514442 CLCN3P51790 818 aa13.74□□□□□ -0.21
TCOF1-213ENST00000514442 NLRP11P59045 1033 aaKnown RBP13.74□□□□□ -0.21
TCOF1-213ENST00000514442 TRIP10Q15642 601 aa13.74□□□□□ -0.21
TCOF1-213ENST00000514442 EFHC2Q5JST6 749 aa13.74□□□□□ -0.21
TCOF1-213ENST00000514442 WDR60Q8WVS4 1066 aa13.74□□□□□ -0.21
TCOF1-213ENST00000514442 THAP11Q96EK4 314 aa13.74□□□□□ -0.21
TCOF1-213ENST00000514442 CTNNAL1Q9UBT7 734 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms