RNA–Protein interactions for RNA: ENST00000512229.6

PCDHA4-202, Transcript of protocadherin alpha 4, humanhuman

TSL 1 (best) BASIC

Gene PCDHA4, Length 4,163 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA4-202ENST00000512229 SKIP12755 728 aa13.75□□□□□ -0.21
PCDHA4-202ENST00000512229 CACNB2Q08289 660 aaPredicted RBP13.75□□□□□ -0.21
PCDHA4-202ENST00000512229 FBXO47Q5MNV8 452 aa13.75□□□□□ -0.21
PCDHA4-202ENST00000512229 SLC27A1Q6PCB7 646 aa13.75□□□□□ -0.21
PCDHA4-202ENST00000512229 PLPPR4Q7Z2D5 763 aa13.75□□□□□ -0.21
PCDHA4-202ENST00000512229 EPS8L1Q8TE68 723 aa13.75□□□□□ -0.21
PCDHA4-202ENST00000512229 VCPIP1Q96JH7 1222 aa13.75□□□□□ -0.21
PCDHA4-202ENST00000512229 CYTH2Q99418 400 aa13.75□□□□□ -0.21
PCDHA4-202ENST00000512229 SPON2Q9BUD6 331 aa13.75□□□□□ -0.21
PCDHA4-202ENST00000512229 TFRCP02786 760 aaKnown RBP13.75□□□□□ -0.21
PCDHA4-202ENST00000512229 RPLP2P05387 115 aaKnown RBP13.75□□□□□ -0.21
PCDHA4-202ENST00000512229 AKR1A1P14550 325 aa13.75□□□□□ -0.21
PCDHA4-202ENST00000512229 PAMP19021 973 aa13.75□□□□□ -0.21
PCDHA4-202ENST00000512229 RAP1GAPP47736 663 aa13.75□□□□□ -0.21
PCDHA4-202ENST00000512229 ITGA8P53708 1063 aa13.75□□□□□ -0.21
PCDHA4-202ENST00000512229 KCNT1Q5JUK3 1230 aa13.75□□□□□ -0.21
PCDHA4-202ENST00000512229 ATG16L1Q676U5 607 aa13.75□□□□□ -0.21
PCDHA4-202ENST00000512229 CASKIN2Q8WXE0 1202 aa13.75□□□□□ -0.21
PCDHA4-202ENST00000512229 ATG4AQ8WYN0 398 aa13.75□□□□□ -0.21
PCDHA4-202ENST00000512229 PFDN4Q9NQP4 134 aa13.75□□□□□ -0.21
PCDHA4-202ENST00000512229 A0A0U1RQJ8 604 aa13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 PPP1R37O75864 691 aa13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 ALDH1A1P00352 501 aa13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 THP07101 528 aa13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 ABHD15Q6UXT9 468 aa13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 ZNF410Q86VK4 478 aa13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 RSRC1Q96IZ7 334 aaKnown RBP13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 TTC1Q99614 292 aa13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 SENP1Q9P0U3 644 aa13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 ITGA11Q9UKX5 1188 aa13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 MYH2Q9UKX2 1941 aa13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 ZBBXA8MT70 800 aa13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 AGTP01019 485 aa13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 KRT10P13645 584 aa13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 ACO1P21399 889 aaKnown RBP13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 GTF2A1P52655 376 aaPredicted RBP13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 CDH8P55286 799 aa13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 SESN2P58004 480 aaPredicted RBP13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 TMPRSS15P98073 1019 aa13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 GUCY1A3Q02108 690 aa13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 CAPSQ13938 189 aa13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 VEPH1Q14D04 833 aa13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 SLC7A14Q8TBB6 771 aa13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 IKZF4Q9H2S9 585 aa13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 PAK5Q9P286 719 aa13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 BARX2Q9UMQ3 279 aaPredicted RBP13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 PCDHGC5Q9Y5F6 944 aa13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 CYB561D2O14569 222 aa13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 SLC29A2Q14542 456 aa13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 LRRC14Q15048 493 aa13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 TAF1BQ53T94 588 aaPredicted RBP13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 GJC2Q5T442 439 aaPredicted RBP13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 SYCP2LQ5T4T6 812 aa13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 DCP1BQ8IZD4 617 aaKnown RBP13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 EMC1Q8N766 993 aa13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 SOCS4Q8WXH5 440 aa13.74□□□□□ -0.21
PCDHA4-202ENST00000512229 LACTBL1A8MY62 500 aa13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 BNIP3LO60238 219 aa13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 ZNF189O75820 626 aaPredicted RBP13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 STIP1P31948 543 aaKnown RBP13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 NCKAP1LP55160 1127 aa13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 INHBEP58166 350 aa13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 HSDL1Q3SXM5 330 aa13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 LRRN4CLQ8ND94 238 aa13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 EXD1Q8NHP7 514 aa13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 MBOAT7Q96N66 472 aa13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 AGAP3Q96P47 875 aa13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 CNPY3Q9BT09 278 aa13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 GLTPD2A6NH11 291 aa13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 UPP2O95045 317 aa13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 NCAM1P13591 858 aa13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 PCK1P35558 622 aa13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 MAGEA4P43358 317 aa13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 MFSD10Q14728 455 aa13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 MAPRE1Q15691 268 aaKnown RBP13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 TFDP3Q5H9I0 405 aa13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 NT5DC3Q86UY8 548 aa13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 GMLQ99445 158 aa13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 ACP6Q9NPH0 428 aa13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 BCAT1P54687 386 aa13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 MCL1Q07820 350 aa13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 RCN2Q14257 317 aa13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 RRP1BQ14684 758 aaKnown RBP13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 ZACNQ401N2 412 aa13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 FAM133BQ5BKY9 247 aaKnown RBP13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 CREG2Q8IUH2 290 aa13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 C12orf56Q8IXR9 622 aa13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 FBXO25Q8TCJ0 367 aa13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 SKA2Q8WVK7 121 aaPredicted RBP13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 SHC3Q92529 594 aa13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 VPS11Q9H270 941 aa13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 ANKZF1Q9H8Y5 726 aa13.73□□□□□ -0.21
PCDHA4-202ENST00000512229 RCCD1A6NED2 376 aa13.72□□□□□ -0.21
PCDHA4-202ENST00000512229 FZD9O00144 591 aa13.72□□□□□ -0.21
PCDHA4-202ENST00000512229 AP1G2O75843 785 aa13.72□□□□□ -0.21
PCDHA4-202ENST00000512229 EGFRP00533 1210 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms