RNA–Protein interactions for RNA: ENST00000508342.5

NEDD4-208, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,235 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-208ENST00000508342 UBE2ZQ9H832 354 aaPredicted RBP3.12□□□□□ -1.91
NEDD4-208ENST00000508342 NGRNQ9NPE2 291 aaKnown RBP3.12□□□□□ -1.91
NEDD4-208ENST00000508342 AASDHPPTQ9NRN7 309 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 CTTNBP2NLQ9P2B4 639 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 PADI3Q9ULW8 664 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 AGAP1Q9UPQ3 857 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 PCDHB11Q9Y5F2 797 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 SPECC1L-ADORA2AF8WAN1 911 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 ACTN4O43707 911 aaKnown RBP3.12□□□□□ -1.91
NEDD4-208ENST00000508342 PLA2G6O60733 806 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 ALPPL2P10696 532 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 SOX5P35711 763 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 GNL1P36915 607 aaPredicted RBP3.12□□□□□ -1.91
NEDD4-208ENST00000508342 SULT1E1P49888 294 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 STX17P56962 302 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 RBP5P82980 135 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 CENPCQ03188 943 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 GRIK3Q13003 919 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 KIAA1755Q5JYT7 1200 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 EOGTQ5NDL2 527 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 APOA5Q6Q788 366 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 LBX2Q6XYB7 198 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 ZNF662Q6ZS27 426 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 PLPPR4Q7Z2D5 763 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 DGLUCYQ7Z3D6 616 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 CMTR2Q8IYT2 770 aaKnown RBP3.12□□□□□ -1.91
NEDD4-208ENST00000508342 MAB21L3Q8N8X9 362 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 ZNF579Q8NAF0 562 aaKnown RBP3.12□□□□□ -1.91
NEDD4-208ENST00000508342 CCNYQ8ND76 341 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 AUTS2Q8WXX7 1259 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 LARP4BQ92615 738 aaKnown RBP3.12□□□□□ -1.91
NEDD4-208ENST00000508342 RABGGTAQ92696 567 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 E2F7Q96AV8 911 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 AK8Q96MA6 479 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 FBXL18Q96ME1 805 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 TMEM175Q9BSA9 504 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 PHF20Q9BVI0 1012 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 CRISPLD2Q9H0B8 497 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 TMEM117Q9H0C3 514 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 COG4Q9H9E3 785 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 KIAA1586Q9HCI6 787 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 PLCB1Q9NQ66 1216 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 RGL1Q9NZL6 768 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 NFASCO94856 1347 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 LAMA4Q16363 1823 aa3.12□□□□□ -1.91
NEDD4-208ENST00000508342 CCDC160A6NGH7 325 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 UBXN8O00124 270 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 MAN2B1O00754 1011 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 SRGAP2O75044 1071 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 COQ9O75208 318 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 DGAT1O75907 488 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 RTN3O95197 1032 aaPredicted RBP3.11□□□□□ -1.91
NEDD4-208ENST00000508342 MOCS2O96007 188 aaPredicted RBP3.11□□□□□ -1.91
NEDD4-208ENST00000508342 PLS3P13797 630 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 SMARCA1P28370 1054 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 PCSK1P29120 753 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 MFAP3P55082 362 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 SGCGQ13326 291 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 Q4G0T1 1027 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 THEMIS2Q5TEJ8 643 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 EGFLAMQ63HQ2 1017 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 RAB44Q7Z6P3 723 aaPredicted RBP3.11□□□□□ -1.91
NEDD4-208ENST00000508342 CTAGE3PQ8IX95 158 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 FOPNLQ96NB1 174 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 FOXP1Q9H334 677 aaPredicted RBP3.11□□□□□ -1.91
NEDD4-208ENST00000508342 MAPK8IP1Q9UQF2 711 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 MYH11P35749 1972 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 SMIM23A6NLE4 172 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 SPATA31C2B4DYI2 1134 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 ESRRBO95718 433 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 CDC25CP30307 473 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 ARL4AP40617 200 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 LHX1P48742 406 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 ZNF75DP51815 510 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 WDR5P61964 334 aaKnown RBP3.11□□□□□ -1.91
NEDD4-208ENST00000508342 DCLRE1AQ6PJP8 1040 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 DDX42Q86XP3 938 aaKnown RBP eCLIP3.11□□□□□ -1.919e-8■■■■■ 81.4
NEDD4-208ENST00000508342 NKAIN3Q8N8D7 197 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 KLHL23Q8NBE8 558 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 DDI1Q8WTU0 396 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 MRPS27Q92552 414 aaKnown RBP3.11□□□□□ -1.91
NEDD4-208ENST00000508342 IFT43Q96FT9 208 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 SH2D3AQ9BRG2 576 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 C17orf80Q9BSJ5 609 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 FAM107BQ9H098 131 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 SP110Q9HB58 689 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 ZNF212Q9UDV6 495 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 ASIC3Q9UHC3 531 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 RIPK3Q9Y572 518 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 ANKRD12Q6UB98 2062 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 EIF3DO15371 548 aaKnown RBP eCLIP3.11□□□□□ -1.91
NEDD4-208ENST00000508342 TDP2O95551 362 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 PYGLP06737 847 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 IVLP07476 585 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 CLTAP09496 248 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 KRT3P12035 628 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 CTSEP14091 401 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 NAMPTP43490 491 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 MAP3K7CLP57077 242 aa3.11□□□□□ -1.91
NEDD4-208ENST00000508342 SMAD4Q13485 552 aaKnown RBP3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms