RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 PTPDC1A2A3K4 754 aa4.77□□□□□ -1.65
USP54-217ENST00000498213 LCHNA4D1U4 455 aa4.77□□□□□ -1.65
USP54-217ENST00000498213 PATE3B3GLJ2 98 aa4.77□□□□□ -1.65
USP54-217ENST00000498213 OVOL3O00110 214 aa4.77□□□□□ -1.65
USP54-217ENST00000498213 ARHGAP6O43182 974 aa4.77□□□□□ -1.65
USP54-217ENST00000498213 GLRX3O76003 335 aaKnown RBP4.77□□□□□ -1.65
USP54-217ENST00000498213 MPIG6BO95866 241 aa4.77□□□□□ -1.65
USP54-217ENST00000498213 HIBADHP31937 336 aaKnown RBP4.77□□□□□ -1.65
USP54-217ENST00000498213 ZEB1P37275 1124 aaPredicted RBP4.77□□□□□ -1.65
USP54-217ENST00000498213 GDF5P43026 501 aa4.77□□□□□ -1.65
USP54-217ENST00000498213 GYG1P46976 350 aa4.77□□□□□ -1.65
USP54-217ENST00000498213 ATXN1P54253 815 aaKnown RBP4.77□□□□□ -1.65
USP54-217ENST00000498213 ROM1Q03395 351 aa4.77□□□□□ -1.65
USP54-217ENST00000498213 SQSTM1Q13501 440 aa4.77□□□□□ -1.65
USP54-217ENST00000498213 PCOLCEQ15113 449 aa4.77□□□□□ -1.65
USP54-217ENST00000498213 RNF151Q2KHN1 245 aa4.77□□□□□ -1.65
USP54-217ENST00000498213 TWISTNBQ3B726 338 aaPredicted RBP4.77□□□□□ -1.65
USP54-217ENST00000498213 CATSPEREQ5SY80 951 aa4.77□□□□□ -1.65
USP54-217ENST00000498213 AGBL4Q5VU57 503 aa4.77□□□□□ -1.65
USP54-217ENST00000498213 TCTN3Q6NUS6 607 aa4.77□□□□□ -1.65
USP54-217ENST00000498213 CC2D1AQ6P1N0 951 aaPredicted RBP4.77□□□□□ -1.65
USP54-217ENST00000498213 USP30Q70CQ3 517 aa4.77□□□□□ -1.65
USP54-217ENST00000498213 RNF180Q86T96 592 aa4.77□□□□□ -1.65
USP54-217ENST00000498213 TMEM105Q8N8V8 129 aa4.77□□□□□ -1.65
USP54-217ENST00000498213 DNERQ8NFT8 737 aa4.77□□□□□ -1.65
USP54-217ENST00000498213 CLUHP3Q96NS8 147 aa4.77□□□□□ -1.65
USP54-217ENST00000498213 OR14A2Q96R54 314 aa4.77□□□□□ -1.65
USP54-217ENST00000498213 DPYSL5Q9BPU6 564 aa4.77□□□□□ -1.65
USP54-217ENST00000498213 OR10A2Q9H208 303 aa4.77□□□□□ -1.65
USP54-217ENST00000498213 PRKRIP1Q9H875 184 aaPredicted RBP4.77□□□□□ -1.65
USP54-217ENST00000498213 LAS1LQ9Y4W2 734 aaKnown RBP4.77□□□□□ -1.65
USP54-217ENST00000498213 CACNA1FO60840 1977 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 PDS5AQ29RF7 1337 aaKnown RBP4.76□□□□□ -1.65
USP54-217ENST00000498213 SLC15A5A6NIM6 579 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 KIF28PB7ZC32 967 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 GOLGA6L22H0YM25 854 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 GRM8O00222 908 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 APAF1O14727 1248 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 PPP1R12AO14974 1030 aaPredicted RBP4.76□□□□□ -1.65
USP54-217ENST00000498213 DNAJC8O75937 253 aaPredicted RBP4.76□□□□□ -1.65
USP54-217ENST00000498213 LMNAP02545 664 aaKnown RBP4.76□□□□□ -1.65
USP54-217ENST00000498213 JMJD7P0C870 316 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 RARBP10826 455 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 TACR2P21452 398 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 FNTBP49356 437 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 STAT5BP51692 787 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 ACLYP53396 1101 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 ALDH6A1Q02252 535 aaKnown RBP4.76□□□□□ -1.65
USP54-217ENST00000498213 SIGLEC14Q08ET2 396 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 ZNF460Q14592 562 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 NOLC1Q14978 699 aaKnown RBP eCLIP4.76□□□□□ -1.65
USP54-217ENST00000498213 EIF4HQ15056 248 aaKnown RBP4.76□□□□□ -1.65
USP54-217ENST00000498213 TCEA2Q15560 299 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 KRT24Q2M2I5 525 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 RABL6Q3YEC7 729 aaPredicted RBP4.76□□□□□ -1.65
USP54-217ENST00000498213 KANK2Q63ZY3 851 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 TMEM200BQ69YZ2 307 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 LDHAL6AQ6ZMR3 332 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 UBE3BQ7Z3V4 1068 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 TMCO2Q7Z6W1 182 aaPredicted RBP4.76□□□□□ -1.65
USP54-217ENST00000498213 DEFB128Q7Z7B8 93 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 DPP9Q86TI2 863 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 HOMER1Q86YM7 354 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 SYNPOQ8N3V7 929 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 ZGPATQ8N5A5 531 aaKnown RBP4.76□□□□□ -1.65
USP54-217ENST00000498213 OR14K1Q8NGZ2 314 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 WDR66Q8TBY9 1149 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 Q8TCH9 128 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 ADOQ96SZ5 270 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 FOXB1Q99853 325 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 HIPK3Q9H422 1215 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 CD248Q9HCU0 757 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 ACSS2Q9NR19 701 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 TMEM260Q9NX78 707 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 ZKSCAN5Q9Y2L8 839 aa4.76□□□□□ -1.65
USP54-217ENST00000498213 PTPRCP08575 1304 aa4.75□□□□□ -1.65
USP54-217ENST00000498213 SALL1Q9NSC2 1324 aa4.75□□□□□ -1.65
USP54-217ENST00000498213 GBF1Q92538 1859 aa4.75□□□□□ -1.65
USP54-217ENST00000498213 FRMPD3Q5JV73 1810 aa4.75□□□□□ -1.65
USP54-217ENST00000498213 UBA6A0AVT1 1052 aaPredicted RBP4.75□□□□□ -1.65
USP54-217ENST00000498213 FOXS1O43638 330 aa4.75□□□□□ -1.65
USP54-217ENST00000498213 CTNND1O60716 968 aaKnown RBP4.75□□□□□ -1.65
USP54-217ENST00000498213 HOXC6P09630 235 aa4.75□□□□□ -1.65
USP54-217ENST00000498213 IFIT1P09914 478 aaKnown RBP4.75□□□□□ -1.65
USP54-217ENST00000498213 CT47B1P0C2W7 299 aaPredicted RBP4.75□□□□□ -1.65
USP54-217ENST00000498213 COMTP21964 271 aa4.75□□□□□ -1.65
USP54-217ENST00000498213 RPS19P39019 145 aaKnown RBP4.75□□□□□ -1.65
USP54-217ENST00000498213 CDK7P50613 346 aa4.75□□□□□ -1.65
USP54-217ENST00000498213 SLC6A3Q01959 620 aa4.75□□□□□ -1.65
USP54-217ENST00000498213 PRKD1Q15139 912 aaPredicted RBP4.75□□□□□ -1.65
USP54-217ENST00000498213 TAF7LQ5H9L4 462 aa4.75□□□□□ -1.65
USP54-217ENST00000498213 BEND3Q5T5X7 828 aa4.75□□□□□ -1.65
USP54-217ENST00000498213 PRAMEF9Q5VWM5 478 aa4.75□□□□□ -1.65
USP54-217ENST00000498213 SLFN12LQ6IEE8 588 aa4.75□□□□□ -1.65
USP54-217ENST00000498213 CDC42EP5Q6NZY7 148 aa4.75□□□□□ -1.65
USP54-217ENST00000498213 LARP4Q71RC2 724 aaKnown RBP eCLIP4.75□□□□□ -1.65
USP54-217ENST00000498213 SPRED1Q7Z699 444 aa4.75□□□□□ -1.65
USP54-217ENST00000498213 CERS3Q8IU89 383 aa4.75□□□□□ -1.65
USP54-217ENST00000498213 HERC6Q8IVU3 1022 aa4.75□□□□□ -1.65
USP54-217ENST00000498213 RPUSD2Q8IZ73 545 aaKnown RBP4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms