RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 KRT9P35527 623 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 HNF4AP41235 474 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 POLD2P49005 469 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 SULT1E1P49888 294 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 MNAT1P51948 309 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 SCRN1Q12765 414 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 TUBA3CQ13748 450 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 SCARB2Q14108 478 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 PTPN21Q16825 1174 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 TUBB8Q3ZCM7 444 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 ODF2Q5BJF6 829 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 GPR158Q5T848 1215 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 METTL11BQ5VVY1 283 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 MBLAC2Q68D91 279 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 C11orf88Q6PI97 169 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 VHLLQ6RSH7 139 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 PPP1R21Q6ZMI0 780 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 CCDC149Q6ZUS6 474 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 PLEKHM3Q6ZWE6 761 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 SLC41A1Q8IVJ1 513 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 CELF2-AS1Q8N7Q2 184 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 BBOF1Q8ND07 529 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 MDM1Q8TC05 714 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 KCTD13Q8WZ19 329 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 FERMT2Q96AC1 680 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 CHFRQ96EP1 664 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 COG3Q96JB2 828 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 TUBA1CQ9BQE3 449 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 CHCHD6Q9BRQ6 235 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 GPATCH1Q9BRR8 931 aaKnown RBP5.86□□□□□ -1.47
VPS41-209ENST00000457055 TRPV4Q9HBA0 871 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 ST7Q9NRC1 585 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 HDAC6Q9UBN7 1215 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 APEX2Q9UBZ4 518 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 ZNF711Q9Y462 761 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 SPEF1Q9Y4P9 236 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 SLC4A4Q9Y6R1 1079 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 NWD1Q149M9 1564 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 INO80Q9ULG1 1556 aaPredicted RBP5.85□□□□□ -1.47
VPS41-209ENST00000457055 PRDM15P57071 1507 aaPredicted RBP5.85□□□□□ -1.47
VPS41-209ENST00000457055 BLMP54132 1417 aaPredicted RBP5.85□□□□□ -1.47
VPS41-209ENST00000457055 TROQ12816 1431 aaPredicted RBP5.85□□□□□ -1.47
VPS41-209ENST00000457055 ZNF804BA4D1E1 1349 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 CGNL1Q0VF96 1302 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 KDM2BQ8NHM5 1336 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 CCDC169A6NNP5 214 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 H7C0S8 307 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 UBXN8O00124 270 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 SGK1O00141 431 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 CACNB4O00305 520 aaPredicted RBP5.85□□□□□ -1.47
VPS41-209ENST00000457055 MAFO75444 373 aaPredicted RBP5.85□□□□□ -1.47
VPS41-209ENST00000457055 NF2P35240 595 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 THBS2P35442 1172 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 NPTX2P47972 431 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 ATP5OP48047 213 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 ATXN1P54253 815 aaKnown RBP5.85□□□□□ -1.47
VPS41-209ENST00000457055 HDAC4P56524 1084 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 ADAM17P78536 824 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 IL1RL1Q01638 556 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 RUNX1T1Q06455 604 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 PPFIA1Q13136 1202 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 NEDD9Q14511 834 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 PPA1Q15181 289 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 KRTCAP3Q53RY4 240 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 CCDC183Q5T5S1 534 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 NAA16Q6N069 864 aaPredicted RBP5.85□□□□□ -1.47
VPS41-209ENST00000457055 ALKBH5Q6P6C2 394 aaKnown RBP5.85□□□□□ -1.47
VPS41-209ENST00000457055 IKBIPQ70UQ0 350 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 LPCAT2Q7L5N7 544 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 LRRC71Q8N4P6 559 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 CRACR2BQ8N4Y2 399 aaPredicted RBP5.85□□□□□ -1.47
VPS41-209ENST00000457055 TTC39CQ8N584 583 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 AADATQ8N5Z0 425 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 PLEKHO2Q8TD55 490 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 DENND1AQ8TEH3 1009 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 CDKL2Q92772 493 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 COPS5Q92905 334 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 FATE1Q969F0 183 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 CLIP3Q96DZ5 547 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 SHDQ96IW2 340 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 PPP1R9BQ96SB3 815 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 MMP19Q99542 508 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 SDF4Q9BRK5 362 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 C11orf84Q9BUA3 381 aaPredicted RBP5.85□□□□□ -1.47
VPS41-209ENST00000457055 CRB3Q9BUF7 120 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 KIAA1683Q9H0B3 1180 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 MYLK2Q9H1R3 596 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 MROH8Q9H579 483 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 PCDH18Q9HCL0 1135 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 CD93Q9NPY3 652 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 GPRC5CQ9NQ84 441 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 SPATS2LQ9NUQ6 558 aaKnown RBP5.85□□□□□ -1.47
VPS41-209ENST00000457055 INTS10Q9NVR2 710 aaKnown RBP5.85□□□□□ -1.47
VPS41-209ENST00000457055 NSMCE4AQ9NXX6 385 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 BTG4Q9NY30 223 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 HECAQ9UBI9 543 aaPredicted RBP5.85□□□□□ -1.47
VPS41-209ENST00000457055 EIF2B4Q9UI10 523 aaKnown RBP5.85□□□□□ -1.47
VPS41-209ENST00000457055 GJD2Q9UKL4 321 aa5.85□□□□□ -1.47
VPS41-209ENST00000457055 TRPC5Q9UL62 973 aaPredicted RBP5.85□□□□□ -1.47
VPS41-209ENST00000457055 CCPG1Q9ULG6 757 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms