RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 TRIM55Q9BYV6 548 aa22.39■■□□□ 1.18
USP48-205ENST00000421625 KCNK13Q9HB14 408 aa22.39■■□□□ 1.18
USP48-205ENST00000421625 TBX20Q9UMR3 447 aa22.39■■□□□ 1.18
USP48-205ENST00000421625 IFNB1P01574 187 aa22.39■■□□□ 1.17
USP48-205ENST00000421625 GLRA2P23416 452 aa22.39■■□□□ 1.17
USP48-205ENST00000421625 RPS6KA3P51812 740 aa22.39■■□□□ 1.17
USP48-205ENST00000421625 ARFIP2P53365 341 aa22.39■■□□□ 1.17
USP48-205ENST00000421625 MTHFD1LQ6UB35 978 aa22.39■■□□□ 1.17
USP48-205ENST00000421625 ZFAND2BQ8WV99 257 aa22.39■■□□□ 1.17
USP48-205ENST00000421625 ZDHHC15Q96MV8 337 aa22.39■■□□□ 1.17
USP48-205ENST00000421625 TMEM120AQ9BXJ8 343 aa22.39■■□□□ 1.17
USP48-205ENST00000421625 ST6GALNAC4Q9H4F1 302 aa22.39■■□□□ 1.17
USP48-205ENST00000421625 SYNCQ9H7C4 482 aa22.39■■□□□ 1.17
USP48-205ENST00000421625 PCDHB2Q9Y5E7 798 aa22.39■■□□□ 1.17
USP48-205ENST00000421625 TLR3O15455 904 aaKnown RBP22.39■■□□□ 1.17
USP48-205ENST00000421625 RTN3O95197 1032 aaPredicted RBP22.39■■□□□ 1.17
USP48-205ENST00000421625 GCNT1Q02742 428 aa22.39■■□□□ 1.17
USP48-205ENST00000421625 ZBTB16Q05516 673 aa22.39■■□□□ 1.17
USP48-205ENST00000421625 UGCGQ16739 394 aa22.39■■□□□ 1.17
USP48-205ENST00000421625 WDR72Q3MJ13 1102 aa22.39■■□□□ 1.17
USP48-205ENST00000421625 SLC39A4Q6P5W5 647 aa22.39■■□□□ 1.17
USP48-205ENST00000421625 CCNJLQ8IV13 435 aa22.39■■□□□ 1.17
USP48-205ENST00000421625 SKA1Q96BD8 255 aa22.39■■□□□ 1.17
USP48-205ENST00000421625 SLITRK1Q96PX8 696 aa22.39■■□□□ 1.17
USP48-205ENST00000421625 TMEM121Q9BTD3 319 aa22.39■■□□□ 1.17
USP48-205ENST00000421625 TRIM4Q9C037 500 aa22.39■■□□□ 1.17
USP48-205ENST00000421625 KCNH7Q9NS40 1196 aa22.39■■□□□ 1.17
USP48-205ENST00000421625 KRT82Q9NSB4 513 aa22.39■■□□□ 1.17
USP48-205ENST00000421625 TJP3O95049 919 aa22.38■■□□□ 1.17
USP48-205ENST00000421625 CYP24A1Q07973 514 aa22.38■■□□□ 1.17
USP48-205ENST00000421625 AP1B1Q10567 949 aa22.38■■□□□ 1.17
USP48-205ENST00000421625 MSS51Q4VC12 460 aa22.38■■□□□ 1.17
USP48-205ENST00000421625 STMN2Q93045 179 aa22.38■■□□□ 1.17
USP48-205ENST00000421625 FGD4Q96M96 766 aa22.38■■□□□ 1.17
USP48-205ENST00000421625 PAFAH2Q99487 392 aa22.38■■□□□ 1.17
USP48-205ENST00000421625 TSSK1BQ9BXA7 367 aa22.38■■□□□ 1.17
USP48-205ENST00000421625 C1orf112Q9NSG2 853 aa22.38■■□□□ 1.17
USP48-205ENST00000421625 YWHABP31946 246 aaKnown RBP22.38■■□□□ 1.17
USP48-205ENST00000421625 ERFP50548 548 aa22.38■■□□□ 1.17
USP48-205ENST00000421625 MCCD1P59942 119 aaPredicted RBP22.38■■□□□ 1.17
USP48-205ENST00000421625 THOC5Q13769 683 aaKnown RBP22.38■■□□□ 1.17
USP48-205ENST00000421625 LIN9Q5TKA1 542 aa22.38■■□□□ 1.17
USP48-205ENST00000421625 PLA2G4FQ68DD2 849 aa22.38■■□□□ 1.17
USP48-205ENST00000421625 MZB1Q8WU39 189 aa22.38■■□□□ 1.17
USP48-205ENST00000421625 GATA6Q92908 595 aa22.38■■□□□ 1.17
USP48-205ENST00000421625 MFSD14AQ96MC6 490 aa22.38■■□□□ 1.17
USP48-205ENST00000421625 EHMT1Q9H9B1 1298 aa22.38■■□□□ 1.17
USP48-205ENST00000421625 SSU72Q9NP77 194 aaKnown RBP22.38■■□□□ 1.17
USP48-205ENST00000421625 STX18Q9P2W9 335 aaKnown RBP22.38■■□□□ 1.17
USP48-205ENST00000421625 KRT1P04264 644 aa22.37■■□□□ 1.17
USP48-205ENST00000421625 AMPD1P23109 780 aa22.37■■□□□ 1.17
USP48-205ENST00000421625 PSMC4P43686 418 aa22.37■■□□□ 1.17
USP48-205ENST00000421625 SPOPLQ6IQ16 392 aa22.37■■□□□ 1.17
USP48-205ENST00000421625 SP8Q8IXZ3 490 aa22.37■■□□□ 1.17
USP48-205ENST00000421625 TAB3Q8N5C8 712 aaPredicted RBP22.37■■□□□ 1.17
USP48-205ENST00000421625 TMEM161BQ8NDZ6 487 aa22.37■■□□□ 1.17
USP48-205ENST00000421625 ACER1Q8TDN7 264 aa22.37■■□□□ 1.17
USP48-205ENST00000421625 C10orf88Q9H8K7 445 aa22.37■■□□□ 1.17
USP48-205ENST00000421625 A0A1B0GVG6 124 aa22.37■■□□□ 1.17
USP48-205ENST00000421625 DHX15O43143 795 aaKnown RBP22.37■■□□□ 1.17
USP48-205ENST00000421625 CPA2P48052 419 aa22.37■■□□□ 1.17
USP48-205ENST00000421625 SNRPFP62306 86 aaKnown RBP22.37■■□□□ 1.17
USP48-205ENST00000421625 RPL7AP62424 266 aaKnown RBP22.37■■□□□ 1.17
USP48-205ENST00000421625 CDK16Q00536 496 aa22.37■■□□□ 1.17
USP48-205ENST00000421625 RASA2Q15283 850 aa22.37■■□□□ 1.17
USP48-205ENST00000421625 BANPQ8N9N5 519 aa22.37■■□□□ 1.17
USP48-205ENST00000421625 IL31RAQ8NI17 732 aa22.37■■□□□ 1.17
USP48-205ENST00000421625 TMC2Q8TDI7 906 aa22.37■■□□□ 1.17
USP48-205ENST00000421625 ARMCX1Q9P291 453 aa22.37■■□□□ 1.17
USP48-205ENST00000421625 DENND3A2RUS2 1198 aa22.36■■□□□ 1.17
USP48-205ENST00000421625 KLRG2A4D1S0 409 aaPredicted RBP22.36■■□□□ 1.17
USP48-205ENST00000421625 UBTFL6P0CB48 400 aaPredicted RBP22.36■■□□□ 1.17
USP48-205ENST00000421625 ESRRAP11474 423 aaPredicted RBP22.36■■□□□ 1.17
USP48-205ENST00000421625 QARSP47897 775 aaKnown RBP22.36■■□□□ 1.17
USP48-205ENST00000421625 NEK3P51956 506 aa22.36■■□□□ 1.17
USP48-205ENST00000421625 HIF1AQ16665 826 aa22.36■■□□□ 1.17
USP48-205ENST00000421625 FNBP1LQ5T0N5 605 aa22.36■■□□□ 1.17
USP48-205ENST00000421625 ANKRD22Q5VYY1 191 aa22.36■■□□□ 1.17
USP48-205ENST00000421625 PDCD7Q8N8D1 485 aaKnown RBP22.36■■□□□ 1.17
USP48-205ENST00000421625 CFAP61Q8NHU2 1237 aa22.36■■□□□ 1.17
USP48-205ENST00000421625 IWS1Q96ST2 819 aa22.36■■□□□ 1.17
USP48-205ENST00000421625 DDX50Q9BQ39 737 aaKnown RBP22.36■■□□□ 1.17
USP48-205ENST00000421625 WDR83Q9BRX9 315 aaKnown RBP22.36■■□□□ 1.17
USP48-205ENST00000421625 G3V3G9 751 aa22.36■■□□□ 1.17
USP48-205ENST00000421625 SGK1O00141 431 aa22.36■■□□□ 1.17
USP48-205ENST00000421625 ATP2A1O14983 1001 aa22.36■■□□□ 1.17
USP48-205ENST00000421625 NOMO3P69849 1222 aa22.36■■□□□ 1.17
USP48-205ENST00000421625 DCAF8Q5TAQ9 597 aa22.36■■□□□ 1.17
USP48-205ENST00000421625 TXNRD3NBQ6F5E7 133 aa22.36■■□□□ 1.17
USP48-205ENST00000421625 PPFIBP2Q8ND30 876 aa22.36■■□□□ 1.17
USP48-205ENST00000421625 ZNF516Q92618 1163 aa22.36■■□□□ 1.17
USP48-205ENST00000421625 TRAPPC9Q96Q05 1148 aa22.36■■□□□ 1.17
USP48-205ENST00000421625 SHOC2Q9UQ13 582 aa22.36■■□□□ 1.17
USP48-205ENST00000421625 ZNF536O15090 1300 aa22.36■■□□□ 1.17
USP48-205ENST00000421625 MAP3K7O43318 606 aa22.35■■□□□ 1.17
USP48-205ENST00000421625 NPTX2P47972 431 aa22.35■■□□□ 1.17
USP48-205ENST00000421625 SOX10P56693 466 aa22.35■■□□□ 1.17
USP48-205ENST00000421625 PLCB3Q01970 1234 aa22.35■■□□□ 1.17
USP48-205ENST00000421625 OASLQ15646 514 aaKnown RBP22.35■■□□□ 1.17
USP48-205ENST00000421625 ADGRD1Q6QNK2 874 aa22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms