RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 FAM184AQ8NB25 1140 aa17.46■□□□□ 0.39
CUX2-202ENST00000397643 INTS4Q96HW7 963 aaKnown RBP17.46■□□□□ 0.39
CUX2-202ENST00000397643 PNMA5Q96PV4 448 aa17.46■□□□□ 0.39
CUX2-202ENST00000397643 ZCWPW1Q9H0M4 648 aa17.46■□□□□ 0.39
CUX2-202ENST00000397643 NOL7Q9UMY1 257 aaKnown RBP17.46■□□□□ 0.39
CUX2-202ENST00000397643 SMC3Q9UQE7 1217 aa17.46■□□□□ 0.39
CUX2-202ENST00000397643 CCL26Q9Y258 94 aa17.46■□□□□ 0.39
CUX2-202ENST00000397643 KIF3AQ9Y496 699 aa17.46■□□□□ 0.39
CUX2-202ENST00000397643 SPEGQ15772 3267 aa17.46■□□□□ 0.39
CUX2-202ENST00000397643 OBSL1O75147 1896 aa17.46■□□□□ 0.38
CUX2-202ENST00000397643 SCN1AP35498 2009 aa17.45■□□□□ 0.38
CUX2-202ENST00000397643 TRDMT1O14717 391 aaKnown RBP17.45■□□□□ 0.38
CUX2-202ENST00000397643 CYP11A1P05108 521 aa17.45■□□□□ 0.38
CUX2-202ENST00000397643 CCDC192P0DO97 292 aa17.45■□□□□ 0.38
CUX2-202ENST00000397643 ODC1P11926 461 aa17.45■□□□□ 0.38
CUX2-202ENST00000397643 U2AF2P26368 475 aaKnown RBP eCLIP17.45■□□□□ 0.38
CUX2-202ENST00000397643 CDC25CP30307 473 aa17.45■□□□□ 0.38
CUX2-202ENST00000397643 MPLP40238 635 aa17.45■□□□□ 0.38
CUX2-202ENST00000397643 CDR1P51861 262 aa17.45■□□□□ 0.38
CUX2-202ENST00000397643 SMTNP53814 917 aa17.45■□□□□ 0.38
CUX2-202ENST00000397643 SLC12A3P55017 1021 aa17.45■□□□□ 0.38
CUX2-202ENST00000397643 NCKAP1LP55160 1127 aa17.45■□□□□ 0.38
CUX2-202ENST00000397643 PLK5Q496M5 336 aa17.45■□□□□ 0.38
CUX2-202ENST00000397643 C9orf57Q5W0N0 161 aa17.45■□□□□ 0.38
CUX2-202ENST00000397643 TRIM68Q6AZZ1 485 aa17.45■□□□□ 0.38
CUX2-202ENST00000397643 TCEAL6Q6IPX3 200 aa17.45■□□□□ 0.38
CUX2-202ENST00000397643 TCEAL3Q969E4 200 aa17.45■□□□□ 0.38
CUX2-202ENST00000397643 SEPT5Q99719 369 aaPredicted RBP17.45■□□□□ 0.38
CUX2-202ENST00000397643 FBRSL1Q9HCM7 1045 aaKnown RBP17.45■□□□□ 0.38
CUX2-202ENST00000397643 GKN1Q9NS71 199 aa17.45■□□□□ 0.38
CUX2-202ENST00000397643 PIRO00625 290 aa17.44■□□□□ 0.38
CUX2-202ENST00000397643 RNF40O75150 1001 aa17.44■□□□□ 0.38
CUX2-202ENST00000397643 EGFP01133 1207 aa17.44■□□□□ 0.38
CUX2-202ENST00000397643 PRPHP41219 470 aa17.44■□□□□ 0.38
CUX2-202ENST00000397643 MATR3P43243 847 aaKnown RBP eCLIP17.44■□□□□ 0.38
CUX2-202ENST00000397643 TUFMP49411 452 aaKnown RBP17.44■□□□□ 0.38
CUX2-202ENST00000397643 RUNX3Q13761 415 aa17.44■□□□□ 0.38
CUX2-202ENST00000397643 SLC39A12Q504Y0 691 aa17.44■□□□□ 0.38
CUX2-202ENST00000397643 NAIF1Q69YI7 327 aaPredicted RBP17.44■□□□□ 0.38
CUX2-202ENST00000397643 ARMCX5Q6P1M9 558 aa17.44■□□□□ 0.38
CUX2-202ENST00000397643 CMTM8Q8IZV2 173 aa17.44■□□□□ 0.38
CUX2-202ENST00000397643 SYT2Q8N9I0 419 aaPredicted RBP17.44■□□□□ 0.38
CUX2-202ENST00000397643 TSPAN18Q96SJ8 248 aa17.44■□□□□ 0.38
CUX2-202ENST00000397643 DUSP15Q9H1R2 295 aaPredicted RBP17.44■□□□□ 0.38
CUX2-202ENST00000397643 EBF3Q9H4W6 596 aa17.44■□□□□ 0.38
CUX2-202ENST00000397643 VPS45Q9NRW7 570 aa17.44■□□□□ 0.38
CUX2-202ENST00000397643 THG1LQ9NWX6 298 aaKnown RBP17.44■□□□□ 0.38
CUX2-202ENST00000397643 KCNG1Q9UIX4 513 aa17.44■□□□□ 0.38
CUX2-202ENST00000397643 NPHP3-ACAD11A0A0J9YXS1 232 aa17.43■□□□□ 0.38
CUX2-202ENST00000397643 ANO9A1A5B4 782 aa17.43■□□□□ 0.38
CUX2-202ENST00000397643 LAD1O00515 517 aa17.43■□□□□ 0.38
CUX2-202ENST00000397643 XPOTO43592 962 aaKnown RBP17.43■□□□□ 0.38
CUX2-202ENST00000397643 PIGRP01833 764 aa17.43■□□□□ 0.38
CUX2-202ENST00000397643 PROS1P07225 676 aa17.43■□□□□ 0.38
CUX2-202ENST00000397643 NFICP08651 508 aa17.43■□□□□ 0.38
CUX2-202ENST00000397643 HMGA1P17096 107 aaKnown RBP17.43■□□□□ 0.38
CUX2-202ENST00000397643 GRSF1Q12849 480 aaKnown RBP eCLIP17.43■□□□□ 0.38
CUX2-202ENST00000397643 GNL2Q13823 731 aaKnown RBP17.43■□□□□ 0.38
CUX2-202ENST00000397643 VEPH1Q14D04 833 aa17.43■□□□□ 0.38
CUX2-202ENST00000397643 KYAT1Q16773 422 aa17.43■□□□□ 0.38
CUX2-202ENST00000397643 MGAT5BQ3V5L5 792 aa17.43■□□□□ 0.38
CUX2-202ENST00000397643 ARSHQ5FYA8 562 aa17.43■□□□□ 0.38
CUX2-202ENST00000397643 JADE1Q6IE81 842 aa17.43■□□□□ 0.38
CUX2-202ENST00000397643 SLC39A4Q6P5W5 647 aa17.43■□□□□ 0.38
CUX2-202ENST00000397643 LRRTM3Q86VH5 581 aa17.43■□□□□ 0.38
CUX2-202ENST00000397643 CAMKK1Q8N5S9 505 aa17.43■□□□□ 0.38
CUX2-202ENST00000397643 EZH1Q92800 747 aaPredicted RBP17.43■□□□□ 0.38
CUX2-202ENST00000397643 USP13Q92995 863 aaPredicted RBP17.43■□□□□ 0.38
CUX2-202ENST00000397643 BICD1Q96G01 975 aa17.43■□□□□ 0.38
CUX2-202ENST00000397643 HHIPQ96QV1 700 aa17.43■□□□□ 0.38
CUX2-202ENST00000397643 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.43■□□□□ 0.38
CUX2-202ENST00000397643 SLC8A2Q9UPR5 921 aa17.43■□□□□ 0.38
CUX2-202ENST00000397643 KIAA1549LQ6ZVL6 1849 aa17.42■□□□□ 0.38
CUX2-202ENST00000397643 MYO16Q9Y6X6 1858 aa17.42■□□□□ 0.38
CUX2-202ENST00000397643 A0A0B4J269 797 aa17.42■□□□□ 0.38
CUX2-202ENST00000397643 OGTO15294 1046 aa17.42■□□□□ 0.38
CUX2-202ENST00000397643 ATG13O75143 517 aa17.42■□□□□ 0.38
CUX2-202ENST00000397643 F11P03951 625 aa17.42■□□□□ 0.38
CUX2-202ENST00000397643 ARSAP15289 507 aa17.42■□□□□ 0.38
CUX2-202ENST00000397643 GJB2P29033 226 aa17.42■□□□□ 0.38
CUX2-202ENST00000397643 NMT1P30419 496 aaKnown RBP17.42■□□□□ 0.38
CUX2-202ENST00000397643 PTPAQ15257 358 aa17.42■□□□□ 0.38
CUX2-202ENST00000397643 RNF43Q68DV7 783 aa17.42■□□□□ 0.38
CUX2-202ENST00000397643 PSAPL1Q6NUJ1 521 aa17.42■□□□□ 0.38
CUX2-202ENST00000397643 DTHD1Q6ZMT9 781 aa17.42■□□□□ 0.38
CUX2-202ENST00000397643 GIPC2Q8TF65 315 aa17.42■□□□□ 0.38
CUX2-202ENST00000397643 GCNAQ96QF7 691 aa17.42■□□□□ 0.38
CUX2-202ENST00000397643 RPF1Q9H9Y2 349 aaKnown RBP17.42■□□□□ 0.38
CUX2-202ENST00000397643 FOXD4L1Q9NU39 408 aa17.42■□□□□ 0.38
CUX2-202ENST00000397643 KCND2Q9NZV8 630 aa17.42■□□□□ 0.38
CUX2-202ENST00000397643 ZMYM5Q9UJ78 669 aa17.42■□□□□ 0.38
CUX2-202ENST00000397643 CPSF3Q9UKF6 684 aaKnown RBP17.42■□□□□ 0.38
CUX2-202ENST00000397643 WASF3Q9UPY6 502 aa17.42■□□□□ 0.38
CUX2-202ENST00000397643 WDFY3Q8IZQ1 3526 aa17.42■□□□□ 0.38
CUX2-202ENST00000397643 HNRNPDLO14979 420 aaKnown RBP17.41■□□□□ 0.38
CUX2-202ENST00000397643 PLA2G4BP0C869 781 aa17.41■□□□□ 0.38
CUX2-202ENST00000397643 HAPLN1P10915 354 aaPredicted RBP17.41■□□□□ 0.38
CUX2-202ENST00000397643 PAX3P23760 479 aa17.41■□□□□ 0.38
CUX2-202ENST00000397643 LIG4P49917 911 aa17.41■□□□□ 0.38
CUX2-202ENST00000397643 NLRP12P59046 1061 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms