RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.34□□□□□ -0.43
SYNPO-202ENST00000394243 RABGEF1Q9UJ41 708 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 MROH7-TTC4A0A0A0MT08 1334 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 MLH3Q9UHC1 1453 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 TMEM253P0C7T8 217 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 EPHB2P29323 1055 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 ELF3P78545 371 aaPredicted RBP12.34□□□□□ -0.43
SYNPO-202ENST00000394243 CHRNB3Q05901 458 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 KBTBD12Q3ZCT8 623 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 FAM81AQ8TBF8 368 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 ASIC4Q96FT7 647 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 RMND5BQ96G75 393 aaPredicted RBP12.34□□□□□ -0.43
SYNPO-202ENST00000394243 CD274Q9NZQ7 290 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 SLC39A10Q9ULF5 831 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 RALAP11233 206 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 ATP6V1B2P21281 511 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 TCHHL1Q5QJ38 904 aaPredicted RBP12.33□□□□□ -0.44
SYNPO-202ENST00000394243 DEFB107AQ8IZN7 70 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 LRRN4CLQ8ND94 238 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 RDM1Q8NG50 284 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 BTBD10Q9BSF8 475 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 HDHD2Q9H0R4 259 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 TRPC7Q9HCX4 862 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 A8MXQ7 604 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 PHGDHO43175 533 aaKnown RBP12.33□□□□□ -0.44
SYNPO-202ENST00000394243 PARNO95453 639 aaKnown RBP12.33□□□□□ -0.44
SYNPO-202ENST00000394243 TPI1P60174 286 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 TNFAIP2Q03169 654 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 TRAF2Q12933 501 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 MMRN1Q13201 1228 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 ASAP3Q8TDY4 903 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 STK32AQ8WU08 396 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 TMEM165Q9HC07 324 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 KDM5CP41229 1560 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 KLHL18O94889 574 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 CSPG5O95196 566 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 SLC20A2Q08357 652 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 STK4Q13043 487 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 NDUFA5Q16718 116 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 TTC23LQ6PF05 361 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 C7orf25Q9BPX7 421 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 MKNK1Q9BUB5 465 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 GRIP2Q9C0E4 1043 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 PI4KBQ9UBF8 816 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 HPS5Q9UPZ3 1129 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 ABCB11O95342 1321 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 SASH3O75995 380 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 PDZK1Q5T2W1 519 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 SYTL1Q8IYJ3 562 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 FAM71DQ8N9W8 422 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 CAVIN3Q969G5 261 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 NARS2Q96I59 477 aaKnown RBP12.33□□□□□ -0.44
SYNPO-202ENST00000394243 SPON2Q9BUD6 331 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 DHX36Q9H2U1 1008 aaKnown RBP12.33□□□□□ -0.44
SYNPO-202ENST00000394243 COPG2Q9UBF2 871 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 ATP10BO94823 1461 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 RCAN1P53805 252 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 SMTNL2Q2TAL5 461 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 ARMC3Q5W041 872 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 CATSPER4Q7RTX7 472 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 THEM5Q8N1Q8 247 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 USP33Q8TEY7 942 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 SEPT1Q8WYJ6 367 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 RSPH1Q8WYR4 309 aa12.33□□□□□ -0.44
SYNPO-202ENST00000394243 DMGDHQ9UI17 866 aaKnown RBP12.33□□□□□ -0.44
SYNPO-202ENST00000394243 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.33□□□□□ -0.44
SYNPO-202ENST00000394243 RECQLP46063 649 aaPredicted RBP12.32□□□□□ -0.44
SYNPO-202ENST00000394243 SERPINH1P50454 418 aaKnown RBP12.32□□□□□ -0.44
SYNPO-202ENST00000394243 NME5P56597 212 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 ITGB3BPQ13352 177 aaPredicted RBP12.32□□□□□ -0.44
SYNPO-202ENST00000394243 SH3RF3Q8TEJ3 882 aaPredicted RBP12.32□□□□□ -0.44
SYNPO-202ENST00000394243 LXNQ9BS40 222 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 VPS33BQ9H267 617 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 TRIM39Q9HCM9 518 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 AGO2Q9UKV8 859 aaKnown RBP12.32□□□□□ -0.44
SYNPO-202ENST00000394243 DNAJC16Q9Y2G8 782 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 STX7O15400 261 aaKnown RBP12.32□□□□□ -0.44
SYNPO-202ENST00000394243 MED26O95402 600 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 DDX5P17844 614 aaKnown RBP12.32□□□□□ -0.44
SYNPO-202ENST00000394243 CCSER1Q9C0I3 900 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 ROGDIQ9GZN7 287 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 EIF4G3O43432 1585 aaKnown RBP12.32□□□□□ -0.44
SYNPO-202ENST00000394243 CTTNBP2Q8WZ74 1663 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 PLEKHG3A1L390 1219 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 SLC16A1P53985 500 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 SGF29Q96ES7 293 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 ZNF184Q99676 751 aaPredicted RBP12.32□□□□□ -0.44
SYNPO-202ENST00000394243 FAM49AQ9H0Q0 323 aaPredicted RBP12.32□□□□□ -0.44
SYNPO-202ENST00000394243 RIC8BQ9NVN3 520 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 FAM205CA6NFA0 338 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 USP17L10C9JJH3 530 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 CST8O60676 142 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 DDHD2O94830 711 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 RARGP13631 454 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 NUP62P37198 522 aaPredicted RBP12.32□□□□□ -0.44
SYNPO-202ENST00000394243 PDPK2PQ6A1A2 396 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 SLC13A5Q86YT5 568 aaPredicted RBP12.32□□□□□ -0.44
SYNPO-202ENST00000394243 USP13Q92995 863 aaPredicted RBP12.32□□□□□ -0.44
SYNPO-202ENST00000394243 MYRFQ9Y2G1 1151 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 E9PBE3 544 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms