RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 PLEKHA5Q9HAU0 1116 aa13.84□□□□□ -0.19
NPHP4-203ENST00000378169 PRG3Q9Y2Y8 225 aaPredicted RBP13.84□□□□□ -0.19
NPHP4-203ENST00000378169 CASP2P42575 452 aa13.83□□□□□ -0.19
NPHP4-203ENST00000378169 CDC42EP1Q00587 391 aa13.83□□□□□ -0.19
NPHP4-203ENST00000378169 TMEM132BQ14DG7 1078 aa13.83□□□□□ -0.19
NPHP4-203ENST00000378169 CDCA5Q96FF9 252 aa13.83□□□□□ -0.19
NPHP4-203ENST00000378169 CLMNQ96JQ2 1002 aa13.83□□□□□ -0.19
NPHP4-203ENST00000378169 EPAS1Q99814 870 aa13.83□□□□□ -0.19
NPHP4-203ENST00000378169 RIPK3Q9Y572 518 aa13.83□□□□□ -0.19
NPHP4-203ENST00000378169 AFDNP55196 1824 aaKnown RBP13.83□□□□□ -0.2
NPHP4-203ENST00000378169 PJA2O43164 708 aa13.83□□□□□ -0.2
NPHP4-203ENST00000378169 PEX10O60683 326 aa13.83□□□□□ -0.2
NPHP4-203ENST00000378169 DIAPH2O60879 1101 aa13.83□□□□□ -0.2
NPHP4-203ENST00000378169 CAND2O75155 1236 aa13.83□□□□□ -0.2
NPHP4-203ENST00000378169 HMBSP08397 361 aa13.83□□□□□ -0.2
NPHP4-203ENST00000378169 ACO1P21399 889 aaKnown RBP13.83□□□□□ -0.2
NPHP4-203ENST00000378169 CLEC16AQ2KHT3 1053 aa13.83□□□□□ -0.2
NPHP4-203ENST00000378169 GJC2Q5T442 439 aaPredicted RBP13.83□□□□□ -0.2
NPHP4-203ENST00000378169 MCOLN2Q8IZK6 566 aa13.83□□□□□ -0.2
NPHP4-203ENST00000378169 TRPM4Q8TD43 1214 aa13.83□□□□□ -0.2
NPHP4-203ENST00000378169 EPS8L1Q8TE68 723 aa13.83□□□□□ -0.2
NPHP4-203ENST00000378169 BCAP29Q9UHQ4 241 aa13.83□□□□□ -0.2
NPHP4-203ENST00000378169 UBIAD1Q9Y5Z9 338 aa13.83□□□□□ -0.2
NPHP4-203ENST00000378169 RGPD2P0DJD1 1756 aa13.83□□□□□ -0.2
NPHP4-203ENST00000378169 RRN3P2A6NIE6 340 aa13.83□□□□□ -0.2
NPHP4-203ENST00000378169 PPP1R12AO14974 1030 aaPredicted RBP13.83□□□□□ -0.2
NPHP4-203ENST00000378169 MAPTP10636 758 aaKnown RBP13.83□□□□□ -0.2
NPHP4-203ENST00000378169 PTPN11Q06124 597 aaPredicted RBP13.83□□□□□ -0.2
NPHP4-203ENST00000378169 DBN1Q16643 649 aa13.83□□□□□ -0.2
NPHP4-203ENST00000378169 GANQ9H2C0 597 aa13.83□□□□□ -0.2
NPHP4-203ENST00000378169 XPAP23025 273 aaPredicted RBP13.82□□□□□ -0.2
NPHP4-203ENST00000378169 YY1P25490 414 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 CTCFP49711 727 aaPredicted RBP13.82□□□□□ -0.2
NPHP4-203ENST00000378169 OTUD4Q01804 1114 aaKnown RBP13.82□□□□□ -0.2
NPHP4-203ENST00000378169 MAP3K21Q5TCX8 1036 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 SPATA21Q7Z572 469 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 GPC2Q8N158 579 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 TMEM161BQ8NDZ6 487 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.82□□□□□ -0.2
NPHP4-203ENST00000378169 RAET1EQ8TD07 263 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 PPWD1Q96BP3 646 aaKnown RBP13.82□□□□□ -0.2
NPHP4-203ENST00000378169 UBN1Q9NPG3 1134 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 VAV3Q9UKW4 847 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 ANGPTL3Q9Y5C1 460 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 ROBO3Q96MS0 1386 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 FAM208AQ9UK61 1670 aaKnown RBP13.82□□□□□ -0.2
NPHP4-203ENST00000378169 HAUS5O94927 633 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 NCAM1P13591 858 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 TAF6P49848 677 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 HSD17B4P51659 736 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 COPS2P61201 443 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 STX1BP61266 288 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 ZNF484Q5JVG2 852 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 RAB44Q7Z6P3 723 aaPredicted RBP13.82□□□□□ -0.2
NPHP4-203ENST00000378169 ACTL9Q8TC94 416 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 URGCPQ8TCY9 931 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 KATNAL1Q9BW62 490 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 GPRC5DQ9NZD1 345 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 FAM47DPA6NHR8 397 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 GTF2A2P52657 109 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 CENPCQ03188 943 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 TRIM67Q6ZTA4 783 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 FAM131BQ86XD5 332 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 SPATA2LQ8IUW3 424 aaPredicted RBP13.82□□□□□ -0.2
NPHP4-203ENST00000378169 WDR49Q8IV35 697 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 REPS2Q8NFH8 660 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 SMYD3Q9H7B4 428 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 ABCF3Q9NUQ8 709 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 APOBEC2Q9Y235 224 aaKnown RBP13.82□□□□□ -0.2
NPHP4-203ENST00000378169 PCDHGC5Q9Y5F6 944 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 OPHN1O60890 802 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 OAZ1P54368 228 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 COG7P83436 770 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 GCNT1Q02742 428 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 SLC35G1Q2M3R5 365 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 AGBL2Q5U5Z8 902 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 FBXW10Q5XX13 1052 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 RFX8Q6ZV50 586 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 ANO5Q75V66 913 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 PLEKHH3Q7Z736 793 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 CDC42EP4Q9H3Q1 356 aaKnown RBP13.82□□□□□ -0.2
NPHP4-203ENST00000378169 SYNPO2Q9UMS6 1093 aa13.82□□□□□ -0.2
NPHP4-203ENST00000378169 UBQLN1Q9UMX0 589 aaKnown RBP13.82□□□□□ -0.2
NPHP4-203ENST00000378169 PDHXO00330 501 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 NPM3O75607 178 aaKnown RBP13.81□□□□□ -0.2
NPHP4-203ENST00000378169 UPP2O95045 317 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 PTENP60484 403 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 PRAMEP78395 509 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 OCRLQ01968 901 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 BOLA3Q53S33 107 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 TFDP3Q5H9I0 405 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 CATSPERGQ6ZRH7 1159 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 ASAP3Q8TDY4 903 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 GBA2Q9HCG7 927 aaPredicted RBP13.81□□□□□ -0.2
NPHP4-203ENST00000378169 KCND1Q9NSA2 647 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 SENP1Q9P0U3 644 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 LMO7Q8WWI1 1683 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 ZBTB22O15209 634 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 GRIN3BO60391 1043 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 RARAP10276 462 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms