RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 LCP1P13796 627 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 SLC11A1P49279 550 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 COG7P83436 770 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 DRP2Q13474 957 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 DRAP1Q14919 205 aaPredicted RBP9.73□□□□□ -0.85
UPF2-202ENST00000357604 CCDC114Q96M63 670 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 ACBD6Q9BR61 282 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 NCAM2O15394 837 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 CA3P07451 260 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 HOXB8P17481 243 aaPredicted RBP9.73□□□□□ -0.85
UPF2-202ENST00000357604 ARL4AP40617 200 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 TNFSF9P41273 254 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 CCDC15Q0P6D6 951 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 UNC45BQ8IWX7 931 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 PARD3BQ8TEW8 1205 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 CASD1Q96PB1 797 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 MYO1AQ9UBC5 1043 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 TJP2Q9UDY2 1190 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 AFF4Q9UHB7 1163 aaKnown RBP9.73□□□□□ -0.85
UPF2-202ENST00000357604 EIF3CLB5ME19 914 aaKnown RBP9.73□□□□□ -0.85
UPF2-202ENST00000357604 H2AFZP0C0S5 128 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 GJC1P36383 396 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 SLC11A2P49281 568 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 GCNT1Q02742 428 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 RARS2Q5T160 578 aaKnown RBP9.73□□□□□ -0.85
UPF2-202ENST00000357604 SCYL2Q6P3W7 929 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 H2AFVQ71UI9 128 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 NDUFAF2Q8N183 169 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 ZBTB10Q96DT7 871 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 MRFAP1L1Q96HT8 127 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 XPO6Q96QU8 1125 aaKnown RBP9.73□□□□□ -0.85
UPF2-202ENST00000357604 EIF3CQ99613 913 aaKnown RBP9.73□□□□□ -0.85
UPF2-202ENST00000357604 WNT8AQ9H1J5 351 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 HPCAL4Q9UM19 191 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 PRPSAP2O60256 369 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 PTPN1P18031 435 aaKnown RBP9.73□□□□□ -0.85
UPF2-202ENST00000357604 EPC2Q52LR7 807 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 ZNF394Q53GI3 561 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 EPM2AIP1Q7L775 607 aaPredicted RBP9.73□□□□□ -0.85
UPF2-202ENST00000357604 KLHL23Q8NBE8 558 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 KREMEN2Q8NCW0 462 aa9.73□□□□□ -0.85
UPF2-202ENST00000357604 NRIP1P48552 1158 aa9.72□□□□□ -0.85
UPF2-202ENST00000357604 CLCNKBP51801 687 aa9.72□□□□□ -0.85
UPF2-202ENST00000357604 IRX5P78411 483 aaPredicted RBP9.72□□□□□ -0.85
UPF2-202ENST00000357604 C10orf120Q5SQS8 335 aa9.72□□□□□ -0.85
UPF2-202ENST00000357604 CPA6Q8N4T0 437 aa9.72□□□□□ -0.85
UPF2-202ENST00000357604 ZNF653Q96CK0 615 aa9.72□□□□□ -0.85
UPF2-202ENST00000357604 TUBGCP4Q9UGJ1 667 aa9.72□□□□□ -0.85
UPF2-202ENST00000357604 MRPS17Q9Y2R5 130 aaKnown RBP9.72□□□□□ -0.85
UPF2-202ENST00000357604 MRPL42Q9Y6G3 142 aaKnown RBP9.72□□□□□ -0.85
UPF2-202ENST00000357604 SDC4P31431 198 aa9.72□□□□□ -0.85
UPF2-202ENST00000357604 ST8SIA6P61647 398 aa9.72□□□□□ -0.85
UPF2-202ENST00000357604 TMX1Q9H3N1 280 aa9.72□□□□□ -0.85
UPF2-202ENST00000357604 CD207Q9UJ71 328 aa9.72□□□□□ -0.85
UPF2-202ENST00000357604 STYXL1Q9Y6J8 313 aa9.72□□□□□ -0.85
UPF2-202ENST00000357604 A0A1W2PQJ5 194 aa9.72□□□□□ -0.85
UPF2-202ENST00000357604 KLRC4O43908 158 aa9.72□□□□□ -0.85
UPF2-202ENST00000357604 TNNT1P13805 278 aa9.72□□□□□ -0.85
UPF2-202ENST00000357604 SULT1E1P49888 294 aa9.72□□□□□ -0.85
UPF2-202ENST00000357604 DSC3Q14574 896 aa9.72□□□□□ -0.85
UPF2-202ENST00000357604 INTS6LQ5JSJ4 861 aaKnown RBP9.72□□□□□ -0.85
UPF2-202ENST00000357604 WSCD1Q658N2 575 aa9.72□□□□□ -0.85
UPF2-202ENST00000357604 SMG8Q8ND04 991 aaKnown RBP9.72□□□□□ -0.85
UPF2-202ENST00000357604 SHDQ96IW2 340 aa9.72□□□□□ -0.85
UPF2-202ENST00000357604 XPO4Q9C0E2 1151 aaKnown RBP9.72□□□□□ -0.85
UPF2-202ENST00000357604 GALTP07902 379 aa9.72□□□□□ -0.85
UPF2-202ENST00000357604 CASQ1P31415 396 aa9.72□□□□□ -0.85
UPF2-202ENST00000357604 ITIH3Q06033 890 aa9.72□□□□□ -0.85
UPF2-202ENST00000357604 PARVAQ9NVD7 372 aa9.72□□□□□ -0.85
UPF2-202ENST00000357604 ADAM22Q9P0K1 906 aa9.72□□□□□ -0.85
UPF2-202ENST00000357604 CLUHO75153 1309 aa9.72□□□□□ -0.85
UPF2-202ENST00000357604 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.71□□□□□ -0.85
UPF2-202ENST00000357604 NT5C1B-RDH14C9J2C7 533 aa9.71□□□□□ -0.85
UPF2-202ENST00000357604 PTGS1P23219 599 aa9.71□□□□□ -0.85
UPF2-202ENST00000357604 PSMC1P62191 440 aaKnown RBP9.71□□□□□ -0.85
UPF2-202ENST00000357604 TRIM71Q2Q1W2 868 aaKnown RBP9.71□□□□□ -0.85
UPF2-202ENST00000357604 RABGAP1LQ5R372 815 aa9.71□□□□□ -0.85
UPF2-202ENST00000357604 BZW1Q7L1Q6 419 aaKnown RBP9.71□□□□□ -0.85
UPF2-202ENST00000357604 GPR65Q8IYL9 337 aa9.71□□□□□ -0.85
UPF2-202ENST00000357604 CORO1BQ9BR76 489 aa9.71□□□□□ -0.85
UPF2-202ENST00000357604 CDHR5Q9HBB8 845 aa9.71□□□□□ -0.85
UPF2-202ENST00000357604 BACE2Q9Y5Z0 518 aa9.71□□□□□ -0.85
UPF2-202ENST00000357604 DGKIO75912 1065 aa9.71□□□□□ -0.85
UPF2-202ENST00000357604 WEE2P0C1S8 567 aa9.71□□□□□ -0.85
UPF2-202ENST00000357604 OR1D2P34982 312 aa9.71□□□□□ -0.85
UPF2-202ENST00000357604 EFHC2Q5JST6 749 aa9.71□□□□□ -0.85
UPF2-202ENST00000357604 VARS2Q5ST30 1063 aaKnown RBP9.71□□□□□ -0.85
UPF2-202ENST00000357604 TTI2Q6NXR4 508 aa9.71□□□□□ -0.85
UPF2-202ENST00000357604 ACOT1Q86TX2 421 aa9.71□□□□□ -0.85
UPF2-202ENST00000357604 CCDC170Q8IYT3 715 aa9.71□□□□□ -0.85
UPF2-202ENST00000357604 DEFB123Q8N688 67 aa9.71□□□□□ -0.85
UPF2-202ENST00000357604 SYN2Q92777 582 aaPredicted RBP9.71□□□□□ -0.85
UPF2-202ENST00000357604 MYLPFQ96A32 169 aa9.71□□□□□ -0.85
UPF2-202ENST00000357604 CYFIP2Q96F07 1278 aa9.71□□□□□ -0.85
UPF2-202ENST00000357604 FUBP3Q96I24 572 aaKnown RBP eCLIP9.71□□□□□ -0.85
UPF2-202ENST00000357604 CHAMP1Q96JM3 812 aa9.71□□□□□ -0.85
UPF2-202ENST00000357604 FBXL18Q96ME1 805 aa9.71□□□□□ -0.85
UPF2-202ENST00000357604 PI4K2AQ9BTU6 479 aa9.71□□□□□ -0.85
UPF2-202ENST00000357604 KCTD10Q9H3F6 313 aa9.71□□□□□ -0.85
UPF2-202ENST00000357604 NAGPAQ9UK23 515 aa9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms