RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 RBP5P82980 135 aa17.84■□□□□ 0.45
CPSF4-201ENST00000292476 DHX34Q14147 1143 aaKnown RBP17.84■□□□□ 0.45
CPSF4-201ENST00000292476 EPS8L1Q8TE68 723 aa17.84■□□□□ 0.45
CPSF4-201ENST00000292476 ZBTB9Q96C00 473 aa17.84■□□□□ 0.45
CPSF4-201ENST00000292476 AP1M1Q9BXS5 423 aa17.84■□□□□ 0.45
CPSF4-201ENST00000292476 DDX47Q9H0S4 455 aaKnown RBP17.84■□□□□ 0.45
CPSF4-201ENST00000292476 VRTNQ9H8Y1 702 aa17.84■□□□□ 0.45
CPSF4-201ENST00000292476 OSGEPQ9NPF4 335 aa17.84■□□□□ 0.45
CPSF4-201ENST00000292476 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.84■□□□□ 0.453e-7■■■■■ 76.5
CPSF4-201ENST00000292476 SEPT11Q9NVA2 429 aaKnown RBP17.84■□□□□ 0.45
CPSF4-201ENST00000292476 CNTN6Q9UQ52 1028 aa17.84■□□□□ 0.45
CPSF4-201ENST00000292476 ATP11BQ9Y2G3 1177 aa17.84■□□□□ 0.45
CPSF4-201ENST00000292476 NR2E3Q9Y5X4 410 aa17.84■□□□□ 0.45
CPSF4-201ENST00000292476 STAU1O95793 577 aaKnown RBP17.83■□□□□ 0.45
CPSF4-201ENST00000292476 NFICP08651 508 aa17.83■□□□□ 0.45
CPSF4-201ENST00000292476 KRT19P08727 400 aa17.83■□□□□ 0.45
CPSF4-201ENST00000292476 GBP1P32455 592 aa17.83■□□□□ 0.45
CPSF4-201ENST00000292476 GNGT1P63211 74 aa17.83■□□□□ 0.45
CPSF4-201ENST00000292476 CDR2Q01850 454 aa17.83■□□□□ 0.45
CPSF4-201ENST00000292476 SLC20A2Q08357 652 aa17.83■□□□□ 0.45
CPSF4-201ENST00000292476 ZNF667Q5HYK9 610 aa17.83■□□□□ 0.45
CPSF4-201ENST00000292476 FAM43BQ6ZT52 329 aaPredicted RBP17.83■□□□□ 0.45
CPSF4-201ENST00000292476 ARFGAP2Q8N6H7 521 aa17.83■□□□□ 0.45
CPSF4-201ENST00000292476 UBL4BQ8N7F7 174 aa17.83■□□□□ 0.45
CPSF4-201ENST00000292476 ARHGEF26Q96DR7 871 aa17.83■□□□□ 0.45
CPSF4-201ENST00000292476 KIF12Q96FN5 646 aa17.83■□□□□ 0.45
CPSF4-201ENST00000292476 SNX27Q96L92 541 aa17.83■□□□□ 0.45
CPSF4-201ENST00000292476 RNPC3Q96LT9 517 aaKnown RBP17.83■□□□□ 0.45
CPSF4-201ENST00000292476 THAP2Q9H0W7 228 aa17.83■□□□□ 0.45
CPSF4-201ENST00000292476 APOBEC3GQ9HC16 384 aaKnown RBP17.83■□□□□ 0.45
CPSF4-201ENST00000292476 TMBIM4Q9HC24 238 aa17.83■□□□□ 0.45
CPSF4-201ENST00000292476 PLAAQ9Y263 795 aa17.83■□□□□ 0.45
CPSF4-201ENST00000292476 NUB1Q9Y5A7 615 aa17.83■□□□□ 0.45
CPSF4-201ENST00000292476 PCDHB4Q9Y5E5 795 aa17.83■□□□□ 0.45
CPSF4-201ENST00000292476 CEP290O15078 2479 aa17.83■□□□□ 0.44
CPSF4-201ENST00000292476 ATXN2Q99700 1313 aaKnown RBP17.83■□□□□ 0.44
CPSF4-201ENST00000292476 KRT14P02533 472 aa17.83■□□□□ 0.44
CPSF4-201ENST00000292476 HSD17B3P37058 310 aa17.83■□□□□ 0.44
CPSF4-201ENST00000292476 THPOP40225 353 aa17.83■□□□□ 0.44
CPSF4-201ENST00000292476 GPC5P78333 572 aa17.83■□□□□ 0.44
CPSF4-201ENST00000292476 TRIM60Q495X7 471 aa17.83■□□□□ 0.44
CPSF4-201ENST00000292476 PRPF38BQ5VTL8 546 aaKnown RBP17.83■□□□□ 0.44
CPSF4-201ENST00000292476 TWF2Q6IBS0 349 aaKnown RBP17.83■□□□□ 0.44
CPSF4-201ENST00000292476 FAM228AQ86W67 206 aa17.83■□□□□ 0.44
CPSF4-201ENST00000292476 DNAAF5Q86Y56 855 aa17.83■□□□□ 0.44
CPSF4-201ENST00000292476 RPUSD2Q8IZ73 545 aaKnown RBP17.83■□□□□ 0.44
CPSF4-201ENST00000292476 C1orf127Q8N9H9 656 aa17.83■□□□□ 0.44
CPSF4-201ENST00000292476 BEST2Q8NFU1 509 aa17.83■□□□□ 0.44
CPSF4-201ENST00000292476 DPP3Q9NY33 737 aa17.83■□□□□ 0.44
CPSF4-201ENST00000292476 SNTG2Q9NY99 539 aa17.83■□□□□ 0.44
CPSF4-201ENST00000292476 CNTN3Q9P232 1028 aa17.83■□□□□ 0.44
CPSF4-201ENST00000292476 NOCTQ9UK39 431 aaKnown RBP17.83■□□□□ 0.44
CPSF4-201ENST00000292476 ZMYND8Q9ULU4 1186 aaPredicted RBP17.83■□□□□ 0.44
CPSF4-201ENST00000292476 FGGP02679 453 aa17.82■□□□□ 0.44
CPSF4-201ENST00000292476 ITGB3P05106 788 aa17.82■□□□□ 0.44
CPSF4-201ENST00000292476 SYN1P17600 705 aa17.82■□□□□ 0.44
CPSF4-201ENST00000292476 NR1D1P20393 614 aa17.82■□□□□ 0.44
CPSF4-201ENST00000292476 ABCB4P21439 1286 aa17.82■□□□□ 0.44
CPSF4-201ENST00000292476 DRG2P55039 364 aaKnown RBP17.82■□□□□ 0.44
CPSF4-201ENST00000292476 MGAT3Q09327 533 aa17.82■□□□□ 0.44
CPSF4-201ENST00000292476 MYO1EQ12965 1108 aa17.82■□□□□ 0.44
CPSF4-201ENST00000292476 AGBL2Q5U5Z8 902 aa17.82■□□□□ 0.44
CPSF4-201ENST00000292476 DCAF12L1Q5VU92 463 aa17.82■□□□□ 0.44
CPSF4-201ENST00000292476 SPOPLQ6IQ16 392 aa17.82■□□□□ 0.44
CPSF4-201ENST00000292476 FOXR1Q6PIV2 292 aa17.82■□□□□ 0.44
CPSF4-201ENST00000292476 TRIM72Q6ZMU5 477 aa17.82■□□□□ 0.44
CPSF4-201ENST00000292476 SLC47A2Q86VL8 602 aa17.82■□□□□ 0.44
CPSF4-201ENST00000292476 SPATS2Q86XZ4 545 aaKnown RBP17.82■□□□□ 0.44
CPSF4-201ENST00000292476 RUNDC3BQ96NL0 473 aa17.82■□□□□ 0.44
CPSF4-201ENST00000292476 EIF2AQ9BY44 585 aaKnown RBP17.82■□□□□ 0.44
CPSF4-201ENST00000292476 XYLT2Q9H1B5 865 aa17.82■□□□□ 0.44
CPSF4-201ENST00000292476 CYP3A43Q9HB55 503 aa17.82■□□□□ 0.44
CPSF4-201ENST00000292476 RSPH14Q9UHP6 348 aa17.82■□□□□ 0.44
CPSF4-201ENST00000292476 ST3GAL5Q9UNP4 418 aa17.82■□□□□ 0.44
CPSF4-201ENST00000292476 NFS1Q9Y697 457 aa17.82■□□□□ 0.44
CPSF4-201ENST00000292476 TRIP12Q14669 1992 aaPredicted RBP17.81■□□□□ 0.44
CPSF4-201ENST00000292476 CD4P01730 458 aa17.81■□□□□ 0.44
CPSF4-201ENST00000292476 FTLP02792 175 aaPredicted RBP17.81■□□□□ 0.44
CPSF4-201ENST00000292476 MYZAPP0CAP1 466 aa17.81■□□□□ 0.44
CPSF4-201ENST00000292476 ITGA4P13612 1032 aa17.81■□□□□ 0.44
CPSF4-201ENST00000292476 ATF7P17544 494 aaPredicted RBP17.81■□□□□ 0.44
CPSF4-201ENST00000292476 ACO1P21399 889 aaKnown RBP17.81■□□□□ 0.44
CPSF4-201ENST00000292476 CORO7P57737 925 aa17.81■□□□□ 0.44
CPSF4-201ENST00000292476 FAM26DQ5JW98 314 aa17.81■□□□□ 0.44
CPSF4-201ENST00000292476 ALKAL1Q6UXT8 129 aa17.81■□□□□ 0.44
CPSF4-201ENST00000292476 NOP9Q86U38 636 aaKnown RBP17.81■□□□□ 0.44
CPSF4-201ENST00000292476 FAM129AQ9BZQ8 928 aa17.81■□□□□ 0.44
CPSF4-201ENST00000292476 WNT8AQ9H1J5 351 aa17.81■□□□□ 0.44
CPSF4-201ENST00000292476 TAS2R14Q9NYV8 317 aa17.81■□□□□ 0.44
CPSF4-201ENST00000292476 AMACRQ9UHK6 382 aa17.81■□□□□ 0.44
CPSF4-201ENST00000292476 FEZ2Q9UHY8 353 aaPredicted RBP17.81■□□□□ 0.44
CPSF4-201ENST00000292476 RASAL2Q9UJF2 1139 aa17.81■□□□□ 0.44
CPSF4-201ENST00000292476 UBQLN1Q9UMX0 589 aaKnown RBP17.81■□□□□ 0.44
CPSF4-201ENST00000292476 CHRNA1P02708 482 aa17.8■□□□□ 0.44
CPSF4-201ENST00000292476 SKIP12755 728 aa17.8■□□□□ 0.44
CPSF4-201ENST00000292476 RAB27AP51159 221 aa17.8■□□□□ 0.44
CPSF4-201ENST00000292476 EIF3BP55884 814 aaKnown RBP17.8■□□□□ 0.44
CPSF4-201ENST00000292476 TRADDQ15628 312 aa17.8■□□□□ 0.44
CPSF4-201ENST00000292476 TMEM270Q6UE05 265 aa17.8■□□□□ 0.44
CPSF4-201ENST00000292476 TMC3Q7Z5M5 1100 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms