RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 SLC18A1P54219 525 aa13.07□□□□□ -0.32
NUP88-201ENST00000225696 DYNLT1P63172 113 aa13.07□□□□□ -0.32
NUP88-201ENST00000225696 IRX1P78414 480 aaPredicted RBP13.07□□□□□ -0.32
NUP88-201ENST00000225696 PLCB3Q01970 1234 aa13.07□□□□□ -0.32
NUP88-201ENST00000225696 TRAF1Q13077 416 aa13.07□□□□□ -0.32
NUP88-201ENST00000225696 ZACNQ401N2 412 aa13.07□□□□□ -0.32
NUP88-201ENST00000225696 SEZ6Q53EL9 994 aa13.07□□□□□ -0.32
NUP88-201ENST00000225696 BRDTQ58F21 947 aaPredicted RBP13.07□□□□□ -0.32
NUP88-201ENST00000225696 TTC7BQ86TV6 843 aa13.07□□□□□ -0.32
NUP88-201ENST00000225696 FEZF2Q8TBJ5 459 aa13.07□□□□□ -0.32
NUP88-201ENST00000225696 SYTL5Q8TDW5 730 aaPredicted RBP13.07□□□□□ -0.32
NUP88-201ENST00000225696 MZB1Q8WU39 189 aa13.07□□□□□ -0.32
NUP88-201ENST00000225696 WDR60Q8WVS4 1066 aa13.07□□□□□ -0.32
NUP88-201ENST00000225696 BICD1Q96G01 975 aa13.07□□□□□ -0.32
NUP88-201ENST00000225696 ZBTB45Q96K62 511 aaPredicted RBP13.07□□□□□ -0.32
NUP88-201ENST00000225696 RAVER2Q9HCJ3 691 aaKnown RBP13.07□□□□□ -0.32
NUP88-201ENST00000225696 PSMC3IPQ9P2W1 217 aaPredicted RBP13.07□□□□□ -0.32
NUP88-201ENST00000225696 HEY2Q9UBP5 337 aa13.07□□□□□ -0.32
NUP88-201ENST00000225696 YDJCA8MPS7 323 aa13.06□□□□□ -0.32
NUP88-201ENST00000225696 SGK1O00141 431 aa13.06□□□□□ -0.32
NUP88-201ENST00000225696 ZBED4O75132 1171 aa13.06□□□□□ -0.32
NUP88-201ENST00000225696 ICAM1P05362 532 aa13.06□□□□□ -0.32
NUP88-201ENST00000225696 MARK3P27448 753 aa13.06□□□□□ -0.32
NUP88-201ENST00000225696 ERFP50548 548 aa13.06□□□□□ -0.32
NUP88-201ENST00000225696 SP4Q02446 784 aa13.06□□□□□ -0.32
NUP88-201ENST00000225696 KPNB1Q14974 876 aaKnown RBP13.06□□□□□ -0.32
NUP88-201ENST00000225696 ACSBG2Q5FVE4 666 aa13.06□□□□□ -0.32
NUP88-201ENST00000225696 EFHC2Q5JST6 749 aa13.06□□□□□ -0.32
NUP88-201ENST00000225696 WASHC2DQ5SRD0 308 aa13.06□□□□□ -0.32
NUP88-201ENST00000225696 SYCP2LQ5T4T6 812 aa13.06□□□□□ -0.32
NUP88-201ENST00000225696 LIN9Q5TKA1 542 aa13.06□□□□□ -0.32
NUP88-201ENST00000225696 SPOCD1Q6ZMY3 1216 aa13.06□□□□□ -0.32
NUP88-201ENST00000225696 ENOSF1Q7L5Y1 443 aa13.06□□□□□ -0.32
NUP88-201ENST00000225696 LARGE2Q8N3Y3 721 aa13.06□□□□□ -0.32
NUP88-201ENST00000225696 DNAJC9Q8WXX5 260 aa13.06□□□□□ -0.32
NUP88-201ENST00000225696 TRIM11Q96F44 468 aa13.06□□□□□ -0.32
NUP88-201ENST00000225696 CEP170P1Q96L14 293 aa13.06□□□□□ -0.32
NUP88-201ENST00000225696 MCEEQ96PE7 176 aa13.06□□□□□ -0.32
NUP88-201ENST00000225696 NTPCRQ9BSD7 190 aaKnown RBP13.06□□□□□ -0.32
NUP88-201ENST00000225696 TMEM39BQ9GZU3 492 aa13.06□□□□□ -0.32
NUP88-201ENST00000225696 KCNK13Q9HB14 408 aa13.06□□□□□ -0.32
NUP88-201ENST00000225696 XPNPEP1Q9NQW7 623 aa13.06□□□□□ -0.32
NUP88-201ENST00000225696 NUB1Q9Y5A7 615 aa13.06□□□□□ -0.32
NUP88-201ENST00000225696 ZNF646O15015 1829 aaPredicted RBP13.06□□□□□ -0.32
NUP88-201ENST00000225696 MYH9P35579 1960 aaKnown RBP13.06□□□□□ -0.32
NUP88-201ENST00000225696 TESPA1A2RU30 521 aaPredicted RBP13.05□□□□□ -0.32
NUP88-201ENST00000225696 TMEM191CA6NGB0 347 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 TMEM191BP0C7N4 346 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 COL11A2P13942 1736 aaPredicted RBP13.05□□□□□ -0.32
NUP88-201ENST00000225696 SERPINB3P29508 390 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 VCPP55072 806 aaKnown RBP13.05□□□□□ -0.32
NUP88-201ENST00000225696 GEMIN4P57678 1058 aaKnown RBP13.05□□□□□ -0.32
NUP88-201ENST00000225696 RPS6P62753 249 aaKnown RBP13.05□□□□□ -0.32
NUP88-201ENST00000225696 CUL2Q13617 745 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 MORF4L2Q15014 288 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 PGM5Q15124 567 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 GNPTABQ3T906 1256 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 RINLQ6ZS11 566 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 RFX8Q6ZV50 586 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 ZNF677Q86XU0 584 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 PHF13Q86YI8 300 aaPredicted RBP13.05□□□□□ -0.32
NUP88-201ENST00000225696 RCOR2Q8IZ40 523 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 DTX3LQ8TDB6 740 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 FAM136AQ96C01 138 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 PTCD3Q96EY7 689 aaKnown RBP13.05□□□□□ -0.32
NUP88-201ENST00000225696 ZNF333Q96JL9 665 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 TTC25Q96NG3 672 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 PAFAH2Q99487 392 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 SENP7Q9BQF6 1050 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 DEFB129Q9H1M3 183 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 HERC5Q9UII4 1024 aaKnown RBP13.05□□□□□ -0.32
NUP88-201ENST00000225696 LNPEPQ9UIQ6 1025 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 NFASCO94856 1347 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 hCG_1818297A0A087WSY0 165 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 LRRD1A4D1F6 860 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 E7ENQ6 273 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 STBD1O95210 358 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 RCN1Q15293 331 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 HIF1AQ16665 826 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 SMTNL2Q2TAL5 461 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 C11orf91Q3C1V1 193 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 WDR44Q5JSH3 913 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 RNF220Q5VTB9 566 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 TMEM154Q6P9G4 183 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 C3orf62Q6ZUJ4 267 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 IGDCC3Q8IVU1 814 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 RBBP8NLQ8NC74 664 aaPredicted RBP13.05□□□□□ -0.32
NUP88-201ENST00000225696 OR5B17Q8NGF7 314 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 CPT1BQ92523 772 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 FOXP3Q9BZS1 431 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 MRPL47Q9HD33 250 aaKnown RBP13.05□□□□□ -0.32
NUP88-201ENST00000225696 TBC1D22BQ9NU19 505 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 FEM1BQ9UK73 627 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 SYNPO2Q9UMS6 1093 aa13.05□□□□□ -0.32
NUP88-201ENST00000225696 FARP1Q9Y4F1 1045 aaPredicted RBP13.05□□□□□ -0.32
NUP88-201ENST00000225696 GSC2O15499 205 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 TBX10O75333 385 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 TJP3O95049 919 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 RFC5P40937 340 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 CDKN2BP42772 138 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 143.8 ms