RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 ALG6Q9Y672 507 aa12.23□□□□□ -0.45
CLN6-217ENST00000636964 KLHL7Q8IXQ5 586 aa12.22□□□□□ -0.45
CLN6-217ENST00000636964 RBBP8NLQ8NC74 664 aaPredicted RBP12.22□□□□□ -0.45
CLN6-217ENST00000636964 NUP85Q9BW27 656 aa12.22□□□□□ -0.45
CLN6-217ENST00000636964 PDZD7Q9H5P4 517 aa12.22□□□□□ -0.45
CLN6-217ENST00000636964 GNEQ9Y223 722 aaKnown RBP12.22□□□□□ -0.45
CLN6-217ENST00000636964 PCDHB2Q9Y5E7 798 aa12.22□□□□□ -0.45
CLN6-217ENST00000636964 LACTBL1A8MY62 500 aa12.22□□□□□ -0.45
CLN6-217ENST00000636964 TNPO2O14787 897 aaKnown RBP12.22□□□□□ -0.45
CLN6-217ENST00000636964 NFICP08651 508 aa12.22□□□□□ -0.45
CLN6-217ENST00000636964 NAT2P11245 290 aa12.22□□□□□ -0.45
CLN6-217ENST00000636964 CTGFP29279 349 aa12.22□□□□□ -0.45
CLN6-217ENST00000636964 RDXP35241 583 aaKnown RBP12.22□□□□□ -0.45
CLN6-217ENST00000636964 ZNF200P98182 395 aaPredicted RBP12.22□□□□□ -0.45
CLN6-217ENST00000636964 ZNF211Q13398 564 aaPredicted RBP12.22□□□□□ -0.45
CLN6-217ENST00000636964 SNX1Q13596 522 aa12.22□□□□□ -0.45
CLN6-217ENST00000636964 HIC1Q14526 733 aa12.22□□□□□ -0.45
CLN6-217ENST00000636964 EMC10Q5UCC4 262 aa12.22□□□□□ -0.45
CLN6-217ENST00000636964 ACAD10Q6JQN1 1059 aa12.22□□□□□ -0.45
CLN6-217ENST00000636964 ZNF572Q7Z3I7 529 aaPredicted RBP12.22□□□□□ -0.45
CLN6-217ENST00000636964 ADAT2Q7Z6V5 191 aaKnown RBP12.22□□□□□ -0.45
CLN6-217ENST00000636964 CEP57Q86XR8 500 aa12.22□□□□□ -0.45
CLN6-217ENST00000636964 RHOT2Q8IXI1 618 aa12.22□□□□□ -0.45
CLN6-217ENST00000636964 KRT12Q99456 494 aa12.22□□□□□ -0.45
CLN6-217ENST00000636964 RNF19AQ9NV58 838 aa12.22□□□□□ -0.45
CLN6-217ENST00000636964 ASS1P00966 412 aaKnown RBP12.22□□□□□ -0.45
CLN6-217ENST00000636964 MYL3P08590 195 aa12.22□□□□□ -0.45
CLN6-217ENST00000636964 GNA15P30679 374 aa12.22□□□□□ -0.45
CLN6-217ENST00000636964 GUCY2FP51841 1108 aa12.22□□□□□ -0.45
CLN6-217ENST00000636964 CLEC16AQ2KHT3 1053 aa12.22□□□□□ -0.45
CLN6-217ENST00000636964 PARP9Q8IXQ6 854 aa12.22□□□□□ -0.45
CLN6-217ENST00000636964 CAVIN3Q969G5 261 aa12.22□□□□□ -0.45
CLN6-217ENST00000636964 HES6Q96HZ4 224 aa12.22□□□□□ -0.45
CLN6-217ENST00000636964 ATP8B3O60423 1300 aa12.21□□□□□ -0.45
CLN6-217ENST00000636964 A6NJR5 290 aa12.21□□□□□ -0.45
CLN6-217ENST00000636964 THAP12O43422 761 aa12.21□□□□□ -0.45
CLN6-217ENST00000636964 OPA1O60313 960 aa12.21□□□□□ -0.45
CLN6-217ENST00000636964 PYGLP06737 847 aa12.21□□□□□ -0.45
CLN6-217ENST00000636964 SMIM10L2AP0DMW4 78 aa12.21□□□□□ -0.45
CLN6-217ENST00000636964 SMIM10L2BP0DMW5 78 aa12.21□□□□□ -0.45
CLN6-217ENST00000636964 GRIK3Q13003 919 aa12.21□□□□□ -0.45
CLN6-217ENST00000636964 CRYMQ14894 314 aa12.21□□□□□ -0.45
CLN6-217ENST00000636964 TRADDQ15628 312 aa12.21□□□□□ -0.45
CLN6-217ENST00000636964 AADACL2Q6P093 401 aa12.21□□□□□ -0.45
CLN6-217ENST00000636964 USP38Q8NB14 1042 aa12.21□□□□□ -0.45
CLN6-217ENST00000636964 ARMC2Q8NEN0 867 aa12.21□□□□□ -0.45
CLN6-217ENST00000636964 ARHGAP39Q9C0H5 1083 aa12.21□□□□□ -0.45
CLN6-217ENST00000636964 CNOT8Q9UFF9 292 aaKnown RBP12.21□□□□□ -0.45
CLN6-217ENST00000636964 POLIQ9UNA4 740 aa12.21□□□□□ -0.45
CLN6-217ENST00000636964 TNNC2P02585 160 aa12.21□□□□□ -0.45
CLN6-217ENST00000636964 MARCKSL1P49006 195 aa12.21□□□□□ -0.45
CLN6-217ENST00000636964 JADE1Q6IE81 842 aa12.21□□□□□ -0.45
CLN6-217ENST00000636964 C8orf74Q6P047 294 aa12.21□□□□□ -0.45
CLN6-217ENST00000636964 TTC30AQ86WT1 665 aa12.21□□□□□ -0.45
CLN6-217ENST00000636964 ZNF564Q8TBZ8 553 aaPredicted RBP12.21□□□□□ -0.45
CLN6-217ENST00000636964 ANKRD36BP1Q96IX9 119 aa12.21□□□□□ -0.45
CLN6-217ENST00000636964 NFKBIZQ9BYH8 718 aa12.21□□□□□ -0.45
CLN6-217ENST00000636964 TRIM7Q9C029 511 aa12.21□□□□□ -0.45
CLN6-217ENST00000636964 ZFYVE28Q9HCC9 887 aa12.21□□□□□ -0.45
CLN6-217ENST00000636964 RABL2BQ9UNT1 228 aa12.21□□□□□ -0.45
CLN6-217ENST00000636964 MGAMO43451 1857 aa12.21□□□□□ -0.46
CLN6-217ENST00000636964 COL1A2P08123 1366 aa12.21□□□□□ -0.46
CLN6-217ENST00000636964 SLC10A3P09131 477 aa12.21□□□□□ -0.46
CLN6-217ENST00000636964 HOXD8P13378 290 aaPredicted RBP12.21□□□□□ -0.46
CLN6-217ENST00000636964 TBXAS1P24557 533 aaPredicted RBP12.21□□□□□ -0.46
CLN6-217ENST00000636964 RAP1GAPP47736 663 aa12.21□□□□□ -0.46
CLN6-217ENST00000636964 CARSP49589 748 aaKnown RBP12.21□□□□□ -0.46
CLN6-217ENST00000636964 EPHB4P54760 987 aa12.21□□□□□ -0.46
CLN6-217ENST00000636964 LLGL1Q15334 1064 aa12.21□□□□□ -0.46
CLN6-217ENST00000636964 ZNF699Q32M78 642 aa12.21□□□□□ -0.46
CLN6-217ENST00000636964 ALS2CLQ60I27 953 aa12.21□□□□□ -0.46
CLN6-217ENST00000636964 RUFY4Q6ZNE9 571 aa12.21□□□□□ -0.46
CLN6-217ENST00000636964 C17orf50Q8WW18 174 aa12.21□□□□□ -0.46
CLN6-217ENST00000636964 KRT35Q92764 455 aa12.21□□□□□ -0.46
CLN6-217ENST00000636964 OSMRQ99650 979 aa12.21□□□□□ -0.46
CLN6-217ENST00000636964 CXCL16Q9H2A7 254 aa12.21□□□□□ -0.46
CLN6-217ENST00000636964 GJD2Q9UKL4 321 aa12.21□□□□□ -0.46
CLN6-217ENST00000636964 ESYT3A0FGR9 886 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 DDX3YO15523 660 aaKnown RBP12.2□□□□□ -0.46
CLN6-217ENST00000636964 TSPAN1O60635 241 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 SNUPNO95149 360 aaKnown RBP12.2□□□□□ -0.46
CLN6-217ENST00000636964 GLI1P08151 1106 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 UNGP13051 313 aaPredicted RBP12.2□□□□□ -0.46
CLN6-217ENST00000636964 ITGA4P13612 1032 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 COMTP21964 271 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 CDH8P55286 799 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 ORC1Q13415 861 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 SGSM1Q2NKQ1 1148 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 DCAF12L1Q5VU92 463 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 CCDC70Q6NSX1 233 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 SPATS2Q86XZ4 545 aaKnown RBP12.2□□□□□ -0.46
CLN6-217ENST00000636964 DRAXINQ8NBI3 349 aaPredicted RBP12.2□□□□□ -0.46
CLN6-217ENST00000636964 ALG3Q92685 438 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 PBKQ96KB5 322 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 FAM81BQ96LP2 452 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 RNF14Q9UBS8 474 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 NOC2LQ9Y3T9 749 aaKnown RBP12.2□□□□□ -0.46
CLN6-217ENST00000636964 TRPM7Q96QT4 1865 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 FAM155AB1AL88 458 aaPredicted RBP12.2□□□□□ -0.46
CLN6-217ENST00000636964 B4GALT4O60513 344 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms