RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 TMEM150AQ86TG1 271 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 GPIHBP1Q8IV16 184 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 ARID3BQ8IVW6 561 aaPredicted RBP7.29□□□□□ -1.24
VPS53-213ENST00000572334 ABCA7Q8IZY2 2146 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 MYCT1Q8N699 235 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 LEMD2Q8NC56 503 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 CXorf38Q8TB03 319 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 RIN3Q8TB24 985 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 DEPDC1BQ8WUY9 529 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 IRF7Q92985 503 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 PSMG2Q969U7 264 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 DNAJC19Q96DA6 116 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 CHFRQ96EP1 664 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 BICD1Q96G01 975 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 EPSTI1Q96J88 318 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 FAM84AQ96KN4 292 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 TSPAN18Q96SJ8 248 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 LPIN3Q9BQK8 851 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 CCSER1Q9C0I3 900 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 ZCWPW1Q9H0M4 648 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 ST6GALNAC4Q9H4F1 302 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 RPF1Q9H9Y2 349 aaKnown RBP7.29□□□□□ -1.24
VPS53-213ENST00000572334 LMAN1LQ9HAT1 526 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 PARD6AQ9NPB6 346 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 ASAH2Q9NR71 780 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 ZSCAN32Q9NX65 697 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 NDRG2Q9UN36 371 aaKnown RBP7.29□□□□□ -1.24
VPS53-213ENST00000572334 PIAS3Q9Y6X2 628 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 KMT2BQ9UMN6 2715 aaPredicted RBP7.29□□□□□ -1.24
VPS53-213ENST00000572334 CHD8Q9HCK8 2581 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 MYMKA6NI61 221 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 H0YCG3 227 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 H3BQV1 296 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 K7ESF4 209 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 MAN2B1O00754 1011 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 CHADO15335 359 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 FAM13AO94988 1023 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 PRAMEF12O95522 483 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 CCNE1P24864 410 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 DDIT3P35638 169 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 LONP1P36776 959 aaKnown RBP7.28□□□□□ -1.24
VPS53-213ENST00000572334 UBA7P41226 1012 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 MATR3P43243 847 aaKnown RBP eCLIP7.28□□□□□ -1.24
VPS53-213ENST00000572334 MLLT6P55198 1093 aaPredicted RBP7.28□□□□□ -1.24
VPS53-213ENST00000572334 SATB1Q01826 763 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 CUL4AQ13619 759 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 KYAT1Q16773 422 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 LARP1BQ659C4 914 aaKnown RBP7.28□□□□□ -1.24
VPS53-213ENST00000572334 IQCEQ6IPM2 695 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 FAM173BQ6P4H8 233 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 DSTYKQ6XUX3 929 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 ZNF720Q7Z2F6 126 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 CD302Q8IX05 232 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 ELMOD1Q8N336 334 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 FAM3CQ92520 227 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 LARP4BQ92615 738 aaKnown RBP7.28□□□□□ -1.24
VPS53-213ENST00000572334 CALML4Q96GE6 196 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 CDK5RAP3Q96JB5 506 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 ZFYVE19Q96K21 471 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 MSTO1Q9BUK6 570 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 OXCT2Q9BYC2 517 aaPredicted RBP7.28□□□□□ -1.24
VPS53-213ENST00000572334 FGFBP2Q9BYJ0 223 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 RBM12Q9NTZ6 932 aaKnown RBP7.28□□□□□ -1.24
VPS53-213ENST00000572334 TMLHEQ9NVH6 421 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 HSFX1Q9UBD0 423 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 FBXO2Q9UK22 296 aaPredicted RBP7.28□□□□□ -1.24
VPS53-213ENST00000572334 SMG5Q9UPR3 1016 aaKnown RBP7.28□□□□□ -1.24
VPS53-213ENST00000572334 SMC3Q9UQE7 1217 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 DERAQ9Y315 318 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 C2CD2Q9Y426 696 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 KIF3AQ9Y496 699 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.28□□□□□ -1.24
VPS53-213ENST00000572334 CLIC4Q9Y696 253 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 GON4LQ3T8J9 2241 aa7.28□□□□□ -1.24
VPS53-213ENST00000572334 LAMA1P25391 3075 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 A0A087X0B3 334 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 MYBPHLA2RUH7 354 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 OTOL1A6NHN0 477 aaPredicted RBP7.27□□□□□ -1.25
VPS53-213ENST00000572334 SLC38A8A6NNN8 435 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 ZNF263O14978 683 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 NCAM2O15394 837 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 XPOTO43592 962 aaKnown RBP7.27□□□□□ -1.25
VPS53-213ENST00000572334 ODC1P11926 461 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 HMGA1P17096 107 aaKnown RBP7.27□□□□□ -1.25
VPS53-213ENST00000572334 SCP2P22307 547 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 GABRR2P28476 465 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 WEE1P30291 646 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 CTHP32929 405 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 CASP5P51878 434 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 EPHB3P54753 998 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 CYP4F8P98187 520 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 POU5F1Q01860 360 aaKnown RBP7.27□□□□□ -1.25
VPS53-213ENST00000572334 TNK2Q07912 1038 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 RESTQ13127 1097 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 PLD1Q13393 1074 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 CCINQ13939 588 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 PUM1Q14671 1186 aaKnown RBP eCLIP7.27□□□□□ -1.25
VPS53-213ENST00000572334 TMEM132DQ14C87 1099 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 CCDC142Q17RM4 750 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 RSPO4Q2I0M5 234 aaPredicted RBP7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms