RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 OGDHQ02218 1023 aa21.5■■□□□ 1.03
CLN3-230ENST00000568076 ATP13A4Q4VNC1 1196 aa21.5■■□□□ 1.03
CLN3-230ENST00000568076 PPP1R15BQ5SWA1 713 aa21.5■■□□□ 1.03
CLN3-230ENST00000568076 DENND1BQ6P3S1 775 aa21.5■■□□□ 1.03
CLN3-230ENST00000568076 GPR142Q7Z601 462 aa21.5■■□□□ 1.03
CLN3-230ENST00000568076 MAIP1Q8WWC4 291 aa21.5■■□□□ 1.03
CLN3-230ENST00000568076 MCEEQ96PE7 176 aa21.5■■□□□ 1.03
CLN3-230ENST00000568076 H3BRB1 525 aa21.5■■□□□ 1.03
CLN3-230ENST00000568076 PPFIA4O75335 1185 aa21.5■■□□□ 1.03
CLN3-230ENST00000568076 NUDT17P0C025 328 aa21.5■■□□□ 1.03
CLN3-230ENST00000568076 SMPD1P17405 629 aa21.5■■□□□ 1.03
CLN3-230ENST00000568076 SSR1P43307 286 aaKnown RBP21.5■■□□□ 1.03
CLN3-230ENST00000568076 PPP1R7Q15435 360 aa21.5■■□□□ 1.03
CLN3-230ENST00000568076 WDR72Q3MJ13 1102 aa21.5■■□□□ 1.03
CLN3-230ENST00000568076 RUFY4Q6ZNE9 571 aa21.5■■□□□ 1.03
CLN3-230ENST00000568076 ANKRD23Q86SG2 305 aa21.5■■□□□ 1.03
CLN3-230ENST00000568076 TUT1Q9H6E5 874 aaKnown RBP21.5■■□□□ 1.03
CLN3-230ENST00000568076 COL1A2P08123 1366 aa21.5■■□□□ 1.03
CLN3-230ENST00000568076 ITGB3P05106 788 aa21.49■■□□□ 1.03
CLN3-230ENST00000568076 GCLCP48506 637 aaPredicted RBP21.49■■□□□ 1.03
CLN3-230ENST00000568076 GUCY1A3Q02108 690 aa21.49■■□□□ 1.03
CLN3-230ENST00000568076 TNFAIP2Q03169 654 aa21.49■■□□□ 1.03
CLN3-230ENST00000568076 SLC10A6Q3KNW5 377 aa21.49■■□□□ 1.03
CLN3-230ENST00000568076 ZNF667Q5HYK9 610 aa21.49■■□□□ 1.03
CLN3-230ENST00000568076 MARCH8Q5T0T0 291 aa21.49■■□□□ 1.03
CLN3-230ENST00000568076 CYP4A22Q5TCH4 519 aa21.49■■□□□ 1.03
CLN3-230ENST00000568076 DNAJC24Q6P3W2 148 aa21.49■■□□□ 1.03
CLN3-230ENST00000568076 EXD1Q8NHP7 514 aa21.49■■□□□ 1.03
CLN3-230ENST00000568076 OSBPL8Q9BZF1 889 aa21.49■■□□□ 1.03
CLN3-230ENST00000568076 SEMA4AQ9H3S1 761 aa21.49■■□□□ 1.03
CLN3-230ENST00000568076 MTRF1LQ9UGC7 380 aaKnown RBP21.49■■□□□ 1.03
CLN3-230ENST00000568076 CYTH4Q9UIA0 394 aa21.49■■□□□ 1.03
CLN3-230ENST00000568076 F8VP50 259 aa21.48■■□□□ 1.03
CLN3-230ENST00000568076 ITGBL1O95965 494 aaPredicted RBP21.48■■□□□ 1.03
CLN3-230ENST00000568076 RAD23BP54727 409 aa21.48■■□□□ 1.03
CLN3-230ENST00000568076 LACTBP83111 547 aaPredicted RBP21.48■■□□□ 1.03
CLN3-230ENST00000568076 GRB14Q14449 540 aa21.48■■□□□ 1.03
CLN3-230ENST00000568076 KRT71Q3SY84 523 aa21.48■■□□□ 1.03
CLN3-230ENST00000568076 AGBL2Q5U5Z8 902 aa21.48■■□□□ 1.03
CLN3-230ENST00000568076 ERICH1Q86X53 443 aa21.48■■□□□ 1.03
CLN3-230ENST00000568076 MAML3Q96JK9 1138 aa21.48■■□□□ 1.03
CLN3-230ENST00000568076 TWNKQ96RR1 684 aa21.48■■□□□ 1.03
CLN3-230ENST00000568076 SMYD3Q9H7B4 428 aa21.48■■□□□ 1.03
CLN3-230ENST00000568076 KLHL11Q9NVR0 708 aa21.48■■□□□ 1.03
CLN3-230ENST00000568076 TJP2Q9UDY2 1190 aa21.48■■□□□ 1.03
CLN3-230ENST00000568076 HMGXB4Q9UGU5 601 aa21.48■■□□□ 1.03
CLN3-230ENST00000568076 IVDP26440 423 aa21.48■■□□□ 1.03
CLN3-230ENST00000568076 TMOD1P28289 359 aa21.48■■□□□ 1.03
CLN3-230ENST00000568076 HPDP32754 393 aaPredicted RBP21.48■■□□□ 1.03
CLN3-230ENST00000568076 EIF3BP55884 814 aaKnown RBP21.48■■□□□ 1.03
CLN3-230ENST00000568076 YWHAEP62258 255 aaKnown RBP21.48■■□□□ 1.03
CLN3-230ENST00000568076 ORC1Q13415 861 aa21.48■■□□□ 1.03
CLN3-230ENST00000568076 PTPN20Q4JDL3 420 aa21.48■■□□□ 1.03
CLN3-230ENST00000568076 DPP9Q86TI2 863 aa21.48■■□□□ 1.03
CLN3-230ENST00000568076 FAM118BQ9BPY3 351 aa21.48■■□□□ 1.03
CLN3-230ENST00000568076 RABEP2Q9H5N1 569 aa21.48■■□□□ 1.03
CLN3-230ENST00000568076 CWC15Q9P013 229 aaKnown RBP21.48■■□□□ 1.03
CLN3-230ENST00000568076 BCCIPQ9P287 314 aaKnown RBP eCLIP21.48■■□□□ 1.03
CLN3-230ENST00000568076 DCDC2CA8MYV0 355 aa21.47■■□□□ 1.03
CLN3-230ENST00000568076 PI4K2BG5E9Z4 385 aa21.47■■□□□ 1.03
CLN3-230ENST00000568076 ADCY6O43306 1168 aa21.47■■□□□ 1.03
CLN3-230ENST00000568076 ZEB2O60315 1214 aa21.47■■□□□ 1.03
CLN3-230ENST00000568076 TSPAN1O60635 241 aa21.47■■□□□ 1.03
CLN3-230ENST00000568076 MMP3P08254 477 aa21.47■■□□□ 1.03
CLN3-230ENST00000568076 CD19P15391 556 aa21.47■■□□□ 1.03
CLN3-230ENST00000568076 ADCY2Q08462 1091 aa21.47■■□□□ 1.03
CLN3-230ENST00000568076 IFFO1Q0D2I5 559 aa21.47■■□□□ 1.03
CLN3-230ENST00000568076 PTK6Q13882 451 aa21.47■■□□□ 1.03
CLN3-230ENST00000568076 SLC29A2Q14542 456 aa21.47■■□□□ 1.03
CLN3-230ENST00000568076 GRIK4Q16099 956 aa21.47■■□□□ 1.03
CLN3-230ENST00000568076 DUSP28Q4G0W2 176 aa21.47■■□□□ 1.03
CLN3-230ENST00000568076 SMYD5Q6GMV2 418 aa21.47■■□□□ 1.03
CLN3-230ENST00000568076 NLRP7Q8WX94 980 aa21.47■■□□□ 1.03
CLN3-230ENST00000568076 PTPN18Q99952 460 aa21.47■■□□□ 1.03
CLN3-230ENST00000568076 ASB7Q9H672 318 aa21.47■■□□□ 1.03
CLN3-230ENST00000568076 WHRNQ9P202 907 aa21.47■■□□□ 1.03
CLN3-230ENST00000568076 NOVA2Q9UNW9 492 aaKnown RBP21.47■■□□□ 1.03
CLN3-230ENST00000568076 NEU2Q9Y3R4 380 aa21.47■■□□□ 1.03
CLN3-230ENST00000568076 HOXD8P13378 290 aaPredicted RBP21.47■■□□□ 1.03
CLN3-230ENST00000568076 NFX1Q12986 1120 aaKnown RBP21.47■■□□□ 1.03
CLN3-230ENST00000568076 TRIP13Q15645 432 aaPredicted RBP21.47■■□□□ 1.03
CLN3-230ENST00000568076 CCNG2Q16589 344 aa21.47■■□□□ 1.03
CLN3-230ENST00000568076 TXNRD3NBQ6F5E7 133 aa21.47■■□□□ 1.03
CLN3-230ENST00000568076 DCUN1D2Q6PH85 259 aa21.47■■□□□ 1.03
CLN3-230ENST00000568076 RHBDF2Q6PJF5 856 aa21.47■■□□□ 1.03
CLN3-230ENST00000568076 ILDR2Q71H61 639 aa21.47■■□□□ 1.03
CLN3-230ENST00000568076 SLC4A11Q8NBS3 891 aa21.47■■□□□ 1.03
CLN3-230ENST00000568076 C3orf20Q8ND61 904 aa21.47■■□□□ 1.03
CLN3-230ENST00000568076 FAM129AQ9BZQ8 928 aa21.47■■□□□ 1.03
CLN3-230ENST00000568076 LHX5Q9H2C1 402 aa21.47■■□□□ 1.03
CLN3-230ENST00000568076 AAASQ9NRG9 546 aa21.47■■□□□ 1.03
CLN3-230ENST00000568076 A6NNZ2 444 aa21.46■■□□□ 1.03
CLN3-230ENST00000568076 FGFR4P22455 802 aa21.46■■□□□ 1.03
CLN3-230ENST00000568076 TUBB8Q3ZCM7 444 aa21.46■■□□□ 1.03
CLN3-230ENST00000568076 KIAA0319LQ8IZA0 1049 aa21.46■■□□□ 1.03
CLN3-230ENST00000568076 ATL2Q8NHH9 583 aa21.46■■□□□ 1.03
CLN3-230ENST00000568076 NPLOC4Q8TAT6 608 aa21.46■■□□□ 1.03
CLN3-230ENST00000568076 ELOVL4Q9GZR5 314 aa21.46■■□□□ 1.03
CLN3-230ENST00000568076 ASIC3Q9UHC3 531 aa21.46■■□□□ 1.03
CLN3-230ENST00000568076 CEP83Q9Y592 693 aa21.46■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms