RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 SMOC1Q9H4F8 434 aa13.97□□□□□ -0.17
USP28-212ENST00000544750 C17orf75Q9HAS0 396 aa13.97□□□□□ -0.17
USP28-212ENST00000544750 IL21Q9HBE4 155 aa13.97□□□□□ -0.17
USP28-212ENST00000544750 HSFX1Q9UBD0 423 aa13.97□□□□□ -0.17
USP28-212ENST00000544750 WASF3Q9UPY6 502 aa13.97□□□□□ -0.17
USP28-212ENST00000544750 SLC27A5Q9Y2P5 690 aa13.97□□□□□ -0.17
USP28-212ENST00000544750 PCNX2A6NKB5 2137 aa13.97□□□□□ -0.17
USP28-212ENST00000544750 PI4KAP42356 2102 aa13.96□□□□□ -0.17
USP28-212ENST00000544750 DPYSL4O14531 572 aa13.96□□□□□ -0.17
USP28-212ENST00000544750 TRDMT1O14717 391 aaKnown RBP13.96□□□□□ -0.17
USP28-212ENST00000544750 CXCL8P10145 99 aa13.96□□□□□ -0.17
USP28-212ENST00000544750 HARSP12081 509 aaKnown RBP13.96□□□□□ -0.17
USP28-212ENST00000544750 TYMPP19971 482 aa13.96□□□□□ -0.17
USP28-212ENST00000544750 CYP3A5P20815 502 aa13.96□□□□□ -0.17
USP28-212ENST00000544750 GABRR2P28476 465 aa13.96□□□□□ -0.17
USP28-212ENST00000544750 MPLP40238 635 aa13.96□□□□□ -0.17
USP28-212ENST00000544750 ALDH1A3P47895 512 aa13.96□□□□□ -0.17
USP28-212ENST00000544750 NEK4P51957 841 aa13.96□□□□□ -0.17
USP28-212ENST00000544750 MCL1Q07820 350 aa13.96□□□□□ -0.17
USP28-212ENST00000544750 TRIM29Q14134 588 aa13.96□□□□□ -0.17
USP28-212ENST00000544750 PDIA5Q14554 519 aa13.96□□□□□ -0.17
USP28-212ENST00000544750 NOLC1Q14978 699 aaKnown RBP eCLIP13.96□□□□□ -0.17
USP28-212ENST00000544750 ITPRIPL2Q3MIP1 535 aa13.96□□□□□ -0.17
USP28-212ENST00000544750 GPR158Q5T848 1215 aa13.96□□□□□ -0.17
USP28-212ENST00000544750 FSTL4Q6MZW2 842 aa13.96□□□□□ -0.17
USP28-212ENST00000544750 HAUS6Q7Z4H7 955 aa13.96□□□□□ -0.17
USP28-212ENST00000544750 TASP1Q9H6P5 420 aa13.96□□□□□ -0.17
USP28-212ENST00000544750 PLEKHA5Q9HAU0 1116 aa13.96□□□□□ -0.17
USP28-212ENST00000544750 HPS4Q9NQG7 708 aa13.96□□□□□ -0.17
USP28-212ENST00000544750 LRWD1Q9UFC0 647 aa13.96□□□□□ -0.17
USP28-212ENST00000544750 AKAP13Q12802 2813 aa13.96□□□□□ -0.17
USP28-212ENST00000544750 TNRC6BQ9UPQ9 1833 aaKnown RBP13.96□□□□□ -0.17
USP28-212ENST00000544750 OTOL1A6NHN0 477 aaPredicted RBP13.95□□□□□ -0.18
USP28-212ENST00000544750 PPEF2O14830 753 aa13.95□□□□□ -0.18
USP28-212ENST00000544750 SLC16A4O15374 487 aa13.95□□□□□ -0.18
USP28-212ENST00000544750 SOAT2O75908 522 aa13.95□□□□□ -0.18
USP28-212ENST00000544750 FGF19O95750 216 aa13.95□□□□□ -0.18
USP28-212ENST00000544750 MCM2P49736 904 aa13.95□□□□□ -0.18
USP28-212ENST00000544750 GUCY1B3Q02153 619 aa13.95□□□□□ -0.18
USP28-212ENST00000544750 SPAG1Q07617 926 aa13.95□□□□□ -0.18
USP28-212ENST00000544750 PLK5Q496M5 336 aa13.95□□□□□ -0.18
USP28-212ENST00000544750 KCNK18Q7Z418 384 aa13.95□□□□□ -0.18
USP28-212ENST00000544750 TMEM161BQ8NDZ6 487 aa13.95□□□□□ -0.18
USP28-212ENST00000544750 SPIRE2Q8WWL2 714 aa13.95□□□□□ -0.18
USP28-212ENST00000544750 DRC1Q96MC2 740 aa13.95□□□□□ -0.18
USP28-212ENST00000544750 TMEM121BQ9BXQ6 578 aaPredicted RBP13.95□□□□□ -0.18
USP28-212ENST00000544750 SLC46A2Q9BY10 475 aa13.95□□□□□ -0.18
USP28-212ENST00000544750 DUSP15Q9H1R2 295 aaPredicted RBP13.95□□□□□ -0.18
USP28-212ENST00000544750 VPS45Q9NRW7 570 aa13.95□□□□□ -0.18
USP28-212ENST00000544750 UBQLN1Q9UMX0 589 aaKnown RBP13.95□□□□□ -0.18
USP28-212ENST00000544750 HELZP42694 1942 aaKnown RBP13.94□□□□□ -0.18
USP28-212ENST00000544750 SFI1A8K8P3 1242 aa13.94□□□□□ -0.18
USP28-212ENST00000544750 C1QTNF9BB2RNN3 333 aa13.94□□□□□ -0.18
USP28-212ENST00000544750 FAM189A1O60320 539 aa13.94□□□□□ -0.18
USP28-212ENST00000544750 ADRB2P07550 413 aa13.94□□□□□ -0.18
USP28-212ENST00000544750 C1QTNF9P0C862 333 aa13.94□□□□□ -0.18
USP28-212ENST00000544750 CCDC192P0DO97 292 aa13.94□□□□□ -0.18
USP28-212ENST00000544750 MAPTP10636 758 aaKnown RBP13.94□□□□□ -0.18
USP28-212ENST00000544750 ATF6P18850 670 aa13.94□□□□□ -0.18
USP28-212ENST00000544750 GUCY2FP51841 1108 aa13.94□□□□□ -0.18
USP28-212ENST00000544750 CYP4F8P98187 520 aa13.94□□□□□ -0.18
USP28-212ENST00000544750 ARHGAP15Q53QZ3 475 aa13.94□□□□□ -0.18
USP28-212ENST00000544750 TTC38Q5R3I4 469 aa13.94□□□□□ -0.18
USP28-212ENST00000544750 OVOS1Q6IE37 1185 aa13.94□□□□□ -0.18
USP28-212ENST00000544750 TCEAL6Q6IPX3 200 aa13.94□□□□□ -0.18
USP28-212ENST00000544750 ZPBP2Q6X784 338 aa13.94□□□□□ -0.18
USP28-212ENST00000544750 USP37Q86T82 979 aa13.94□□□□□ -0.18
USP28-212ENST00000544750 ITIH5Q86UX2 942 aa13.94□□□□□ -0.18
USP28-212ENST00000544750 CAMKK1Q8N5S9 505 aa13.94□□□□□ -0.18
USP28-212ENST00000544750 KDF1Q8NAX2 398 aaPredicted RBP13.94□□□□□ -0.18
USP28-212ENST00000544750 OR10T2Q8NGX3 314 aa13.94□□□□□ -0.18
USP28-212ENST00000544750 SNX29Q8TEQ0 813 aa13.94□□□□□ -0.18
USP28-212ENST00000544750 KCNN1Q92952 543 aa13.94□□□□□ -0.18
USP28-212ENST00000544750 TCEAL3Q969E4 200 aa13.94□□□□□ -0.18
USP28-212ENST00000544750 LPIN3Q9BQK8 851 aa13.94□□□□□ -0.18
USP28-212ENST00000544750 MMTAG2Q9BU76 263 aaKnown RBP13.94□□□□□ -0.18
USP28-212ENST00000544750 FOXP1Q9H334 677 aaPredicted RBP13.94□□□□□ -0.18
USP28-212ENST00000544750 GKN1Q9NS71 199 aa13.94□□□□□ -0.18
USP28-212ENST00000544750 POLR3BQ9NW08 1133 aaPredicted RBP13.94□□□□□ -0.18
USP28-212ENST00000544750 ANKFY1Q9P2R3 1169 aa13.94□□□□□ -0.18
USP28-212ENST00000544750 DNM3Q9UQ16 869 aa13.94□□□□□ -0.18
USP28-212ENST00000544750 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.94□□□□□ -0.18
USP28-212ENST00000544750 FASNP49327 2511 aaKnown RBP13.93□□□□□ -0.18
USP28-212ENST00000544750 GIPC1O14908 333 aa13.93□□□□□ -0.18
USP28-212ENST00000544750 CLDN3O15551 220 aa13.93□□□□□ -0.18
USP28-212ENST00000544750 ATG13O75143 517 aa13.93□□□□□ -0.18
USP28-212ENST00000544750 CLTAP09496 248 aa13.93□□□□□ -0.18
USP28-212ENST00000544750 GUCY2CP25092 1073 aa13.93□□□□□ -0.18
USP28-212ENST00000544750 TNFSF9P41273 254 aa13.93□□□□□ -0.18
USP28-212ENST00000544750 TRAPPC10P48553 1259 aa13.93□□□□□ -0.18
USP28-212ENST00000544750 LILRA4P59901 499 aa13.93□□□□□ -0.18
USP28-212ENST00000544750 RUNX3Q13761 415 aa13.93□□□□□ -0.18
USP28-212ENST00000544750 NBR1Q14596 966 aa13.93□□□□□ -0.18
USP28-212ENST00000544750 SAFBQ15424 915 aaKnown RBP eCLIP13.93□□□□□ -0.18
USP28-212ENST00000544750 RNF43Q68DV7 783 aa13.93□□□□□ -0.18
USP28-212ENST00000544750 PSAPL1Q6NUJ1 521 aa13.93□□□□□ -0.18
USP28-212ENST00000544750 UNQ6494/PRO21346Q6UXR6 183 aa13.93□□□□□ -0.18
USP28-212ENST00000544750 TMEM150AQ86TG1 271 aa13.93□□□□□ -0.18
USP28-212ENST00000544750 CMTM8Q8IZV2 173 aa13.93□□□□□ -0.18
USP28-212ENST00000544750 RIN3Q8TB24 985 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms