RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 DAGLBQ8NCG7 672 aa7.13□□□□□ -1.27
CD44-237ENST00000534082 EXOC6Q8TAG9 804 aa7.13□□□□□ -1.27
CD44-237ENST00000534082 BPIFB1Q8TDL5 484 aa7.13□□□□□ -1.27
CD44-237ENST00000534082 CHFRQ96EP1 664 aa7.13□□□□□ -1.27
CD44-237ENST00000534082 PRORYQ9H606 182 aa7.13□□□□□ -1.27
CD44-237ENST00000534082 DHX33Q9H6R0 707 aaKnown RBP7.13□□□□□ -1.27
CD44-237ENST00000534082 ATP13A2Q9NQ11 1180 aa7.13□□□□□ -1.27
CD44-237ENST00000534082 TMEM74BQ9NUR3 256 aa7.13□□□□□ -1.27
CD44-237ENST00000534082 OBP2AQ9NY56 170 aa7.13□□□□□ -1.27
CD44-237ENST00000534082 APOBEC2Q9Y235 224 aaKnown RBP7.13□□□□□ -1.27
CD44-237ENST00000534082 MYO9AB2RTY4 2548 aa7.13□□□□□ -1.27
CD44-237ENST00000534082 THADAQ6YHU6 1953 aa7.13□□□□□ -1.27
CD44-237ENST00000534082 KIF26AQ9ULI4 1882 aaPredicted RBP7.13□□□□□ -1.27
CD44-237ENST00000534082 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 CAPN8A6NHC0 703 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 ADAMTS3O15072 1205 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 ASAP2O43150 1006 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 SH3BP5O60239 455 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 PSMD10O75832 226 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 RECQL4O94761 1208 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 PTGER3P43115 390 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 PTENP60484 403 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 CFHR1Q03591 330 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 EMC2Q15006 297 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 FBXO43Q4G163 708 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 PEAR1Q5VY43 1037 aaPredicted RBP7.12□□□□□ -1.27
CD44-237ENST00000534082 LYSMD4Q5XG99 296 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 TPGS2Q68CL5 300 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 NAIF1Q69YI7 327 aaPredicted RBP7.12□□□□□ -1.27
CD44-237ENST00000534082 LYPD8Q6UX82 237 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 TOGARAM2Q6ZUX3 1019 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 LPCAT2Q7L5N7 544 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 RASSF3Q86WH2 238 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 NAXDQ8IW45 347 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 TMEFF1Q8IYR6 380 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 REXO1Q8N1G1 1221 aaKnown RBP7.12□□□□□ -1.27
CD44-237ENST00000534082 TMTC2Q8N394 836 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 ZNF511Q8NB15 262 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 FANCBQ8NB91 859 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 OR2I1PQ8NGU4 316 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 TCP11Q8WWU5 503 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 CEP170P1Q96L14 293 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 CNOT6LQ96LI5 555 aaKnown RBP7.12□□□□□ -1.27
CD44-237ENST00000534082 FCRL3Q96P31 734 aaPredicted RBP7.12□□□□□ -1.27
CD44-237ENST00000534082 CXCL16Q9H2A7 254 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 FBRSL1Q9HCM7 1045 aaKnown RBP7.12□□□□□ -1.27
CD44-237ENST00000534082 MAP10Q9P2G4 905 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 SLC6A14Q9UN76 642 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 YIPF1Q9Y548 306 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 PCDHB9Q9Y5E1 797 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 SLC12A7Q9Y666 1083 aa7.12□□□□□ -1.27
CD44-237ENST00000534082 NUP210Q8TEM1 1887 aaPredicted RBP7.12□□□□□ -1.27
CD44-237ENST00000534082 TNRC6BQ9UPQ9 1833 aaKnown RBP7.12□□□□□ -1.27
CD44-237ENST00000534082 SHROOM3Q8TF72 1996 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 PTPRQQ9UMZ3 2332 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 TEP1Q99973 2627 aaKnown RBP7.11□□□□□ -1.27
CD44-237ENST00000534082 A0A1B0GUA9 196 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 OTOL1A6NHN0 477 aaPredicted RBP7.11□□□□□ -1.27
CD44-237ENST00000534082 TBX3O15119 743 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 SIAH2O43255 324 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 TRAPPC3O43617 180 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 ITPKAP23677 461 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 U2AF2P26368 475 aaKnown RBP eCLIP7.11□□□□□ -1.27
CD44-237ENST00000534082 ITPKBP27987 946 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 HOXD12P35452 270 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 DPP6P42658 865 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 BRCC3P46736 316 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 CLCNKBP51801 687 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 PSMC5P62195 406 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 GFPT1Q06210 699 aaPredicted RBP7.11□□□□□ -1.27
CD44-237ENST00000534082 RUNX3Q13761 415 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 CAPSQ13938 189 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 TFDP1Q14186 410 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 QPCTQ16769 361 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 GLRA4Q5JXX5 417 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 GPR158Q5T848 1215 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 B3GNT9Q6UX72 402 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 CD300LGQ6UXG3 332 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 TMPRSS7Q7RTY8 843 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 MARCH9Q86YJ5 346 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 EXOC8Q8IYI6 725 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 C3orf58Q8NDZ4 430 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 MDGA1Q8NFP4 955 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 OLIG1Q8TAK6 271 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 EZH1Q92800 747 aaPredicted RBP7.11□□□□□ -1.27
CD44-237ENST00000534082 CCDC136Q96JN2 1154 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 TMEM87BQ96K49 555 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 SPACA7Q96KW9 195 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 FNBP1Q96RU3 617 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 P2RY13Q9BPV8 354 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 MTA3Q9BTC8 594 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 POLR3CQ9BUI4 534 aaPredicted RBP7.11□□□□□ -1.27
CD44-237ENST00000534082 LRRC3Q9BY71 257 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 LNPKQ9C0E8 428 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 CAPN10Q9HC96 672 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 POLMQ9NP87 494 aaPredicted RBP7.11□□□□□ -1.27
CD44-237ENST00000534082 HPS4Q9NQG7 708 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 GKN1Q9NS71 199 aa7.11□□□□□ -1.27
CD44-237ENST00000534082 DNAAF2Q9NVR5 837 aaKnown RBP7.11□□□□□ -1.27
CD44-237ENST00000534082 THG1LQ9NWX6 298 aaKnown RBP7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms