RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 AADATQ8N5Z0 425 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 WDR60Q8WVS4 1066 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 RSAD2Q8WXG1 361 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 AZIN2Q96A70 460 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 TUBGCP5Q96RT8 1024 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 SERINC2Q96SA4 455 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 MPHOSPH9Q99550 1183 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 PRPF18Q99633 342 aaKnown RBP5.9□□□□□ -1.46
CD44-236ENST00000533222 FUCA2Q9BTY2 467 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 SGPP1Q9BX95 441 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 IFIH1Q9BYX4 1025 aaKnown RBP5.9□□□□□ -1.46
CD44-236ENST00000533222 SERHL2Q9H4I8 314 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 ZNF552Q9H707 407 aaPredicted RBP5.9□□□□□ -1.46
CD44-236ENST00000533222 DNAJC18Q9H819 358 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 DCP1AQ9NPI6 582 aaPredicted RBP5.9□□□□□ -1.46
CD44-236ENST00000533222 PIH1D3Q9NQM4 214 aaKnown RBP5.9□□□□□ -1.46
CD44-236ENST00000533222 KMT5AQ9NQR1 393 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 KCTD5Q9NXV2 234 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 MOCS1Q9NZB8 636 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 FBXO2Q9UK22 296 aaPredicted RBP5.9□□□□□ -1.46
CD44-236ENST00000533222 PALD1Q9ULE6 856 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 L1RE1Q9UN81 338 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 ZNF711Q9Y462 761 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 ATP6V1DQ9Y5K8 247 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 ZNF804BA4D1E1 1349 aa5.9□□□□□ -1.47
CD44-236ENST00000533222 NUP160Q12769 1436 aa5.9□□□□□ -1.47
CD44-236ENST00000533222 ZNF608Q9ULD9 1512 aaPredicted RBP5.89□□□□□ -1.47
CD44-236ENST00000533222 CFAP73A6NFT4 308 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 ERVV-2B6SEH9 535 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 EIF3HO15372 352 aaKnown RBP eCLIP5.89□□□□□ -1.47
CD44-236ENST00000533222 PFDN1O60925 122 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 KCNJ13O60928 360 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 GLRX3O76003 335 aaKnown RBP5.89□□□□□ -1.47
CD44-236ENST00000533222 TOMM70O94826 608 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 ECDO95905 644 aaPredicted RBP5.89□□□□□ -1.47
CD44-236ENST00000533222 LTFP02788 710 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 AMY2AP04746 511 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 SYN1P17600 705 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 AMY2BP19961 511 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 IL32P24001 234 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 CCND1P24385 295 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 SKIV2L2P42285 1042 aaKnown RBP5.89□□□□□ -1.47
CD44-236ENST00000533222 GUCY2FP51841 1108 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 THOP1P52888 689 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 NCKAP1LP55160 1127 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 DSTNP60981 165 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 NIPAL4Q0D2K0 466 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 SP140Q13342 867 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 MOGSQ13724 837 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 TMEM95Q3KNT9 176 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 TM4SF20Q53R12 229 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 HABP4Q5JVS0 413 aaKnown RBP5.89□□□□□ -1.47
CD44-236ENST00000533222 SYCP2LQ5T4T6 812 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 TSHZ3Q63HK5 1081 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 STEAP3Q658P3 488 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 ZCCHC8Q6NZY4 707 aaKnown RBP5.89□□□□□ -1.47
CD44-236ENST00000533222 CNNM4Q6P4Q7 775 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 TTC23LQ6PF05 361 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 LIMS2Q7Z4I7 341 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 RALYLQ86SE5 291 aaKnown RBP5.89□□□□□ -1.47
CD44-236ENST00000533222 SKAP1Q86WV1 359 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 SNX32Q86XE0 403 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 DCP2Q8IU60 420 aaKnown RBP5.89□□□□□ -1.47
CD44-236ENST00000533222 PASD1Q8IV76 773 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 RHOT2Q8IXI1 618 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 IGSF22Q8N9C0 903 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.89□□□□□ -1.47
CD44-236ENST00000533222 SH3RF2Q8TEC5 729 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 HPS3Q969F9 1004 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 TBC1D20Q96BZ9 403 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 CLIP3Q96DZ5 547 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 MFSD3Q96ES6 412 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 C11orf24Q96F05 449 aaPredicted RBP5.89□□□□□ -1.47
CD44-236ENST00000533222 NDNQ99608 321 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 TARS2Q9BW92 718 aaKnown RBP5.89□□□□□ -1.47
CD44-236ENST00000533222 CD244Q9BZW8 370 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 PREBQ9HCU5 417 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 SLC40A1Q9NP59 571 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 ATAD3AQ9NVI7 634 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 ANO10Q9NW15 660 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 VPS18Q9P253 973 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 MTRF1LQ9UGC7 380 aaKnown RBP5.89□□□□□ -1.47
CD44-236ENST00000533222 TBK1Q9UHD2 729 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 DBR1Q9UK59 544 aaKnown RBP5.89□□□□□ -1.47
CD44-236ENST00000533222 GRID1Q9ULK0 1009 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 FAM32AQ9Y421 112 aaKnown RBP5.89□□□□□ -1.47
CD44-236ENST00000533222 PRKAB1Q9Y478 270 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 TELO2Q9Y4R8 837 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 MYBBP1AQ9BQG0 1328 aaKnown RBP5.89□□□□□ -1.47
CD44-236ENST00000533222 HFM1A2PYH4 1435 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 PLA2R1Q13018 1463 aa5.89□□□□□ -1.47
CD44-236ENST00000533222 KANSL1LA0AUZ9 987 aa5.88□□□□□ -1.47
CD44-236ENST00000533222 TRIM43BA6NCK2 446 aa5.88□□□□□ -1.47
CD44-236ENST00000533222 GOLGA8KD6RF30 607 aa5.88□□□□□ -1.47
CD44-236ENST00000533222 GOLGA8TH3BQL2 631 aa5.88□□□□□ -1.47
CD44-236ENST00000533222 WNT9AO14904 365 aa5.88□□□□□ -1.47
CD44-236ENST00000533222 XPOTO43592 962 aaKnown RBP5.88□□□□□ -1.47
CD44-236ENST00000533222 FOXD2O60548 495 aaPredicted RBP5.88□□□□□ -1.47
CD44-236ENST00000533222 DGKIO75912 1065 aa5.88□□□□□ -1.47
CD44-236ENST00000533222 PRPF6O94906 941 aaKnown RBP5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms