RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 CCDC130P13994 396 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 CHN1P15882 459 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 CSE1LP55060 971 aaKnown RBP7.49□□□□□ -1.21
VPS53-204ENST00000437048 PPIDQ08752 370 aaKnown RBP7.49□□□□□ -1.21
VPS53-204ENST00000437048 EFHC1Q5JVL4 640 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 DDX17Q92841 729 aaKnown RBP7.49□□□□□ -1.21
VPS53-204ENST00000437048 MIEF2Q96C03 454 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 RHOBTB2Q9BYZ6 727 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 BLZF1Q9H2G9 400 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 MAGEB2O15479 319 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 MOCS3O95396 460 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 RBP1P09455 135 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 CTSWP56202 376 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 LRRIQ1Q96JM4 1722 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 TMEM120BA0PK00 339 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 SKAP2O75563 359 aaPredicted RBP7.49□□□□□ -1.21
VPS53-204ENST00000437048 NR4A1P22736 598 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 AAGABQ6PD74 315 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 GJA10Q969M2 543 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 ZNF560Q96MR9 790 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 PDCD10Q9BUL8 212 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 NCKIPSDQ9NZQ3 722 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 STAT3P40763 770 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 VCPP55072 806 aaKnown RBP7.49□□□□□ -1.21
VPS53-204ENST00000437048 TRAP1Q12931 704 aaKnown RBP7.49□□□□□ -1.21
VPS53-204ENST00000437048 FAM102BQ5T8I3 360 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 PHF23Q9BUL5 403 aaPredicted RBP7.49□□□□□ -1.21
VPS53-204ENST00000437048 PRDM8Q9NQV8 689 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 PEX1O43933 1283 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 PDE8BO95263 885 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 NUDT18Q6ZVK8 323 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 LPCAT2Q7L5N7 544 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 DENND6AQ8IWF6 608 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 MREGQ8N565 214 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 ANKS1AQ92625 1134 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 ANKRD6Q9Y2G4 727 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 ERVV-1B6SEH8 477 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 RAB2AP61019 212 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 PDIA2Q13087 525 aaKnown RBP7.49□□□□□ -1.21
VPS53-204ENST00000437048 NR1I3Q14994 352 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 THNSL1Q8IYQ7 743 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 STK32AQ8WU08 396 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 SKA2Q8WVK7 121 aaPredicted RBP7.49□□□□□ -1.21
VPS53-204ENST00000437048 DNAJB4Q9UDY4 337 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 CYP2E1P05181 493 aaPredicted RBP7.49□□□□□ -1.21
VPS53-204ENST00000437048 PDK1Q15118 436 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 MTHFSDQ2M296 383 aaKnown RBP7.49□□□□□ -1.21
VPS53-204ENST00000437048 MEI1Q5TIA1 1274 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 BNC2Q6ZN30 1099 aaPredicted RBP7.49□□□□□ -1.21
VPS53-204ENST00000437048 MED10Q9BTT4 135 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 GSTK1Q9Y2Q3 226 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 SNX9Q9Y5X1 595 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 ERI2A8K979 691 aaKnown RBP7.49□□□□□ -1.21
VPS53-204ENST00000437048 MAFGO15525 162 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 SLC2A3P11169 496 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 RC3H1Q5TC82 1133 aaKnown RBP7.49□□□□□ -1.21
VPS53-204ENST00000437048 AGAP9Q5VTM2 703 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 GJD3Q8N144 294 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 KYQ8NBH2 561 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 HELQQ8TDG4 1101 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 UBE2TQ9NPD8 197 aaPredicted RBP7.49□□□□□ -1.21
VPS53-204ENST00000437048 KCNK4Q9NYG8 393 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 PGM3O95394 542 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 FTCDO95954 541 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 MTTPP55157 894 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 KRT17Q04695 432 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 Q4G0T1 1027 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 LIN54Q6MZP7 749 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 MZT2AQ6P582 158 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 TNIP3Q96KP6 325 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 RGS18Q9NS28 235 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 DSEQ9UL01 958 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 HBS1LQ9Y450 684 aaKnown RBP7.48□□□□□ -1.21
VPS53-204ENST00000437048 C3orf70A6NLC5 250 aaPredicted RBP7.48□□□□□ -1.21
VPS53-204ENST00000437048 LSM8O95777 96 aaKnown RBP7.48□□□□□ -1.21
VPS53-204ENST00000437048 GCLCP48506 637 aaPredicted RBP7.48□□□□□ -1.21
VPS53-204ENST00000437048 ADARP55265 1226 aaKnown RBP7.48□□□□□ -1.21
VPS53-204ENST00000437048 EIF5AP63241 154 aaKnown RBP7.48□□□□□ -1.21
VPS53-204ENST00000437048 TTLL9Q3SXZ7 439 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 DNAAF5Q86Y56 855 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 PHC3Q8NDX5 983 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 UNC13AQ9UPW8 1703 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 MROH7Q68CQ1 1323 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 PLEKHG3A1L390 1219 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 B2RBV5 119 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 FOXO3O43524 673 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 DLATP10515 647 aaKnown RBP7.48□□□□□ -1.21
VPS53-204ENST00000437048 MLH1P40692 756 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 MMP14P50281 582 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 AP3S2P59780 193 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 CSNK2BP67870 215 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 GFPT1Q06210 699 aaPredicted RBP7.48□□□□□ -1.21
VPS53-204ENST00000437048 NAPEPLDQ6IQ20 393 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 TRIM65Q6PJ69 517 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 STX12Q86Y82 276 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 FAM167BQ9BTA0 163 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 RNPEPL1Q9HAU8 725 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 METTL5Q9NRN9 209 aaKnown RBP7.48□□□□□ -1.21
VPS53-204ENST00000437048 FARP1Q9Y4F1 1045 aaPredicted RBP7.48□□□□□ -1.21
VPS53-204ENST00000437048 ITGA10O75578 1167 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms