RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 FAM102AQ5T9C2 384 aaPredicted RBP13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 SDR42E1Q8WUS8 393 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 TNIP3Q96KP6 325 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 CDH16O75309 829 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 TNFRSF21O75509 655 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 OASLQ15646 514 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 DGUOKQ16854 277 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 KCTD1Q719H9 257 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 MPP4Q96JB8 637 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 ACAD9Q9H845 621 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 EIF3LQ9Y262 564 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 ALDH1A1P00352 501 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 SMCO1Q147U7 214 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 TSHZ1Q6ZSZ6 1077 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 APOL5Q9BWW9 433 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 FAM220BPB1ANY3 271 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 H3BMM5 538 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 ATP9BO43861 1147 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 ATP6V1B2P21281 511 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 HSD3B2P26439 372 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 GRSF1Q12849 480 aaKnown RBP eCLIP13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 VPS33AQ96AX1 596 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 SAMSN1Q9NSI8 373 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 CACNB1Q02641 598 aaPredicted RBP13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 RUNDC3AQ59EK9 446 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 SLC9A6Q92581 669 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 NDUFB9Q9Y6M9 179 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 LBPP18428 481 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 ARF3P61204 181 aaPredicted RBP13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 ARF1P84077 181 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 TBCKQ8TEA7 893 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 GDAQ9Y2T3 454 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 IDH3BO43837 385 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 SEMA3DO95025 777 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 ZCCHC8Q6NZY4 707 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 ZCCHC7Q8N3Z6 543 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 PPP2R3CQ969Q6 453 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 FAR2Q96K12 515 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 C1orf50Q9BV19 199 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 PCP4L1A6NKN8 68 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 TCP10L2B9ZVM9 353 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 MAGEA2P43356 314 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 RXRGP48443 463 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 SCARA3Q6AZY7 606 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 ZSWIM6Q9HCJ5 1215 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 LPIN1Q14693 890 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 PADI6Q6TGC4 694 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 RASSF6Q6ZTQ3 369 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 SPICE1Q8N0Z3 855 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 MMGT1Q8N4V1 131 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 MXD3Q9BW11 206 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 MANSC1Q9H8J5 431 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 ENTPD7Q9NQZ7 604 aa13.88□□□□□ -0.19
CCDC88A-204ENST00000413716 IFT140Q96RY7 1462 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 F8VZ95 297 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 C21orf59P57076 290 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 AP1S1P61966 158 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 TRAF2Q12933 501 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 TWF2Q6IBS0 349 aaKnown RBP13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 LRIG3Q6UXM1 1119 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 CYFIP1Q7L576 1253 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 FAM9CQ8IZT9 166 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 DNAJC12Q9UKB3 198 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 RAD51BO15315 384 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 CYBBP04839 570 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 CDK17Q00537 523 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 ANKMY2Q8IV38 441 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 SUCLG2Q96I99 432 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 B3GALT6Q96L58 329 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 SERPINB12Q96P63 405 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 SPON2Q9BUD6 331 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 ING4Q9UNL4 249 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 SPAG6O75602 509 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 PTK7Q13308 1070 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 PTRHD1Q6GMV3 140 aaKnown RBP13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 PCSK1NQ9UHG2 260 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 ADGRL1O94910 1474 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 B2RBV5 119 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 PSMD14O00487 310 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 RNMTO43148 476 aaKnown RBP13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 CDC16Q13042 620 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 TRAF3Q13114 568 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 ATP13A5Q4VNC0 1218 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 PGBD2Q6P3X8 592 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 PALB2Q86YC2 1186 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 TRPV3Q8NET8 790 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 CAPSLQ8WWF8 208 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 RNF25Q96BH1 459 aaPredicted RBP13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 LBHD1Q9BQE6 289 aaPredicted RBP13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 MAP3K20Q9NYL2 800 aaKnown RBP13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 TRPC4Q9UBN4 977 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 PBRM1Q86U86 1689 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 ARAP1Q96P48 1450 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 KHDRBS3O75525 346 aaKnown RBP13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 DDHD2O94830 711 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 HSF2Q03933 536 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 RESTQ13127 1097 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 GALNTL6Q49A17 601 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 CASP12Q6UXS9 341 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 KDELC2Q7Z4H8 507 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms