RNA–Protein interactions for RNA: YMR309C

NIP1, Transcript of eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3), yeastyeast

Gene NIP1, Length 2,439 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NIP1YMR309C LSM7P53905 115 aaKnown RBP-0.07□□□□□ -2.42
NIP1YMR309C COG5P53951 403 aa-0.07□□□□□ -2.42
NIP1YMR309C HHT1P61830 136 aa-0.07□□□□□ -2.42
NIP1YMR309C SHH3Q04487 196 aa-0.07□□□□□ -2.42
NIP1YMR309C GET4Q12125 312 aa-0.07□□□□□ -2.42
NIP1YMR309C JLP1Q12358 412 aa-0.07□□□□□ -2.42
NIP1YMR309C ADF1Q2V2Q1 113 aa-0.07□□□□□ -2.42
NIP1YMR309C RIF1P29539 1916 aa-0.07□□□□□ -2.42
NIP1YMR309C YAR023CD6VPM8 179 aa-0.07□□□□□ -2.42
NIP1YMR309C RHO1P06780 209 aaKnown RBP-0.07□□□□□ -2.42
NIP1YMR309C STF2P16965 84 aa-0.07□□□□□ -2.42
NIP1YMR309C PPA2P28239 310 aa-0.07□□□□□ -2.42
NIP1YMR309C PAM17P36147 197 aa-0.07□□□□□ -2.42
NIP1YMR309C MAK5P38112 773 aaPredicted RBP-0.07□□□□□ -2.42
NIP1YMR309C CUP9P41817 306 aa-0.07□□□□□ -2.42
NIP1YMR309C ELP6Q04868 273 aa-0.07□□□□□ -2.42
NIP1YMR309C YOL014WQ08110 124 aa-0.07□□□□□ -2.42
NIP1YMR309C YHR213W-BQ8TGK1 99 aa-0.07□□□□□ -2.42
NIP1YMR309C TAR1Q8TGM6 124 aa-0.07□□□□□ -2.42
NIP1YMR309C THP2O13539 261 aaKnown RBP-0.08□□□□□ -2.42
NIP1YMR309C YBR121C-AP0C5L4 52 aa-0.08□□□□□ -2.42
NIP1YMR309C YCR023CP25351 611 aa-0.08□□□□□ -2.42
NIP1YMR309C OCH1P31755 480 aa-0.08□□□□□ -2.42
NIP1YMR309C SPS18P32572 300 aa-0.08□□□□□ -2.42
NIP1YMR309C BMH2P34730 273 aaKnown RBP-0.08□□□□□ -2.42
NIP1YMR309C MTW1P39731 289 aa-0.08□□□□□ -2.42
NIP1YMR309C YER134CP40081 178 aa-0.08□□□□□ -2.42
NIP1YMR309C YJR111CP47148 283 aaKnown RBP-0.08□□□□□ -2.42
NIP1YMR309C THG1P53215 237 aaKnown RBP-0.08□□□□□ -2.42
NIP1YMR309C YNL033WP53964 284 aa-0.08□□□□□ -2.42
NIP1YMR309C PET191Q02772 108 aa-0.08□□□□□ -2.42
NIP1YMR309C SRL4Q03085 281 aa-0.08□□□□□ -2.42
NIP1YMR309C PIR1Q03178 341 aa-0.08□□□□□ -2.42
NIP1YMR309C RRP17Q04031 235 aaPredicted RBP-0.08□□□□□ -2.42
NIP1YMR309C DYN3Q04949 312 aa-0.08□□□□□ -2.42
NIP1YMR309C RNH202Q05635 350 aa-0.08□□□□□ -2.42
NIP1YMR309C GGA1Q06336 557 aa-0.08□□□□□ -2.42
NIP1YMR309C YLR036CQ07986 203 aa-0.08□□□□□ -2.42
NIP1YMR309C PRM3Q08931 133 aa-0.08□□□□□ -2.42
NIP1YMR309C DGK1Q12382 290 aa-0.08□□□□□ -2.42
NIP1YMR309C SEC4P07560 215 aaKnown RBP-0.08□□□□□ -2.42
NIP1YMR309C MER1P16523 270 aa-0.08□□□□□ -2.42
NIP1YMR309C YCR001WP25347 104 aa-0.08□□□□□ -2.42
NIP1YMR309C SER2P42941 309 aa-0.08□□□□□ -2.42
NIP1YMR309C TMA23Q03525 211 aa-0.08□□□□□ -2.42
NIP1YMR309C YMR253CQ04835 414 aa-0.08□□□□□ -2.42
NIP1YMR309C YLR283WQ05867 314 aa-0.08□□□□□ -2.42
NIP1YMR309C NHP6BP11633 99 aaKnown RBP-0.09□□□□□ -2.42
NIP1YMR309C CLG1P35190 452 aa-0.09□□□□□ -2.42
NIP1YMR309C YNL194CP40169 301 aa-0.09□□□□□ -2.42
NIP1YMR309C YGL235WP53071 178 aa-0.09□□□□□ -2.42
NIP1YMR309C GRX5Q02784 150 aa-0.09□□□□□ -2.42
NIP1YMR309C RRP36Q12481 300 aaPredicted RBP-0.09□□□□□ -2.42
NIP1YMR309C YML100W-AQ8TGT0 57 aa-0.09□□□□□ -2.42
NIP1YMR309C MBF1O14467 151 aaKnown RBP-0.09□□□□□ -2.42
NIP1YMR309C SNF4P12904 322 aa-0.09□□□□□ -2.42
NIP1YMR309C STE18P18852 110 aa-0.09□□□□□ -2.42
NIP1YMR309C PRE1P22141 198 aaKnown RBP-0.09□□□□□ -2.42
NIP1YMR309C YBL010CP32788 280 aa-0.09□□□□□ -2.42
NIP1YMR309C YCR087C-AP37263 153 aa-0.09□□□□□ -2.42
NIP1YMR309C RFC4P40339 323 aaKnown RBP-0.09□□□□□ -2.42
NIP1YMR309C GCN20P43535 752 aaKnown RBP-0.09□□□□□ -2.42
NIP1YMR309C IRC18P47056 224 aa-0.09□□□□□ -2.42
NIP1YMR309C MGA1P53050 456 aa-0.09□□□□□ -2.42
NIP1YMR309C NOP19P53317 196 aaPredicted RBP-0.09□□□□□ -2.42
NIP1YMR309C YNG1Q08465 219 aa-0.09□□□□□ -2.42
NIP1YMR309C YMR030W-AQ3E760 96 aa-0.09□□□□□ -2.42
NIP1YMR309C YKL183C-AQ3E765 70 aa-0.09□□□□□ -2.42
NIP1YMR309C MGT1P26188 188 aa-0.1□□□□□ -2.43
NIP1YMR309C NTG1P31378 399 aa-0.1□□□□□ -2.43
NIP1YMR309C PRP18P33411 251 aaPredicted RBP-0.1□□□□□ -2.43
NIP1YMR309C CBT1P36038 271 aaPredicted RBP-0.1□□□□□ -2.43
NIP1YMR309C YKR070WP36151 352 aaKnown RBP-0.1□□□□□ -2.43
NIP1YMR309C SPC25P40014 221 aa-0.1□□□□□ -2.43
NIP1YMR309C ERG28P40030 148 aa-0.1□□□□□ -2.43
NIP1YMR309C YRB1P41920 201 aaKnown RBP-0.1□□□□□ -2.43
NIP1YMR309C SBH1P52870 82 aa-0.1□□□□□ -2.43
NIP1YMR309C YDC1Q02896 317 aa-0.1□□□□□ -2.43
NIP1YMR309C UPS1Q05776 175 aa-0.1□□□□□ -2.43
NIP1YMR309C KEI1Q06346 221 aa-0.1□□□□□ -2.43
NIP1YMR309C FCY1Q12178 158 aa-0.1□□□□□ -2.43
NIP1YMR309C YOL013W-AP0C272 63 aaPredicted RBP-0.11□□□□□ -2.43
NIP1YMR309C TIR1P10863 254 aa-0.11□□□□□ -2.43
NIP1YMR309C ETR1P38071 380 aa-0.11□□□□□ -2.43
NIP1YMR309C YER085CP40058 173 aa-0.11□□□□□ -2.43
NIP1YMR309C RTR1P40084 226 aaPredicted RBP-0.11□□□□□ -2.43
NIP1YMR309C CIN5P40917 295 aa-0.11□□□□□ -2.43
NIP1YMR309C ERG10P41338 398 aaKnown RBP-0.11□□□□□ -2.43
NIP1YMR309C TMA22P47089 198 aaPredicted RBP-0.11□□□□□ -2.43
NIP1YMR309C YOR072WQ08486 104 aa-0.11□□□□□ -2.43
NIP1YMR309C YOR015WQ12169 119 aa-0.11□□□□□ -2.43
NIP1YMR309C RPS24AP0CX31 135 aaKnown RBP-0.11□□□□□ -2.43
NIP1YMR309C RPS24BP0CX32 135 aaKnown RBP-0.11□□□□□ -2.43
NIP1YMR309C PHO85P17157 305 aa-0.11□□□□□ -2.43
NIP1YMR309C COQ1P18900 473 aa-0.11□□□□□ -2.43
NIP1YMR309C IDP1P21954 428 aaKnown RBP-0.11□□□□□ -2.43
NIP1YMR309C POG1P40473 351 aa-0.11□□□□□ -2.43
NIP1YMR309C SKI6P46948 246 aaPredicted RBP-0.11□□□□□ -2.43
NIP1YMR309C RAD17P48581 401 aa-0.11□□□□□ -2.43
NIP1YMR309C YNL122CP53921 115 aaPredicted RBP-0.11□□□□□ -2.43
Retrieved 100 of 5,963 RNA–protein pairs in 83.7 ms