RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W RIO2P40160 425 aaKnown RBP3.89□□□□□ -1.79
PRP40YKL012W APJ1P53940 528 aa3.89□□□□□ -1.79
PRP40YKL012W REP2P03872 296 aa3.89□□□□□ -1.79
PRP40YKL012W AKR2Q12013 749 aa3.89□□□□□ -1.79
PRP40YKL012W DDP1Q99321 188 aaKnown RBP3.89□□□□□ -1.79
PRP40YKL012W IGO2Q9P305 131 aa3.89□□□□□ -1.79
PRP40YKL012W PMD1P32634 1753 aa3.89□□□□□ -1.79
PRP40YKL012W SEC17P32602 292 aa3.88□□□□□ -1.79
PRP40YKL012W AST2P39945 430 aaKnown RBP3.88□□□□□ -1.79
PRP40YKL012W PDS1P40316 373 aaPredicted RBP3.88□□□□□ -1.79
PRP40YKL012W YPL162CQ12042 273 aa3.88□□□□□ -1.79
PRP40YKL012W HKR1P41809 1802 aa3.87□□□□□ -1.79
PRP40YKL012W FIG2P25653 1609 aa3.87□□□□□ -1.79
PRP40YKL012W YLR156WP0CE96 114 aa3.87□□□□□ -1.79
PRP40YKL012W YLR159WP0CE97 114 aa3.87□□□□□ -1.79
PRP40YKL012W YLR161WP0CE98 114 aa3.87□□□□□ -1.79
PRP40YKL012W GCY1P14065 312 aaKnown RBP RIP-Chip data3.87□□□□□ -1.79not detected
PRP40YKL012W GRX2P17695 143 aaKnown RBP3.87□□□□□ -1.79
PRP40YKL012W SEC14P24280 304 aaKnown RBP3.87□□□□□ -1.79
PRP40YKL012W TAH1P25638 111 aaPredicted RBP3.87□□□□□ -1.79
PRP40YKL012W MIG1P27705 504 aa3.87□□□□□ -1.79
PRP40YKL012W VMA11P32842 164 aa3.87□□□□□ -1.79
PRP40YKL012W UTP30P36144 274 aaKnown RBP3.87□□□□□ -1.79
PRP40YKL012W SPO73P40031 143 aa3.87□□□□□ -1.79
PRP40YKL012W GRX8Q05926 109 aa3.87□□□□□ -1.79
PRP40YKL012W YOL024WQ08172 172 aa3.87□□□□□ -1.79
PRP40YKL012W SIR2P06700 562 aa3.86□□□□□ -1.79
PRP40YKL012W PUT1P09368 476 aa3.86□□□□□ -1.79
PRP40YKL012W TRR1P29509 319 aaKnown RBP3.86□□□□□ -1.79
PRP40YKL012W YNL184CP53876 108 aa3.86□□□□□ -1.79
PRP40YKL012W PRM7Q12459 698 aa3.86□□□□□ -1.79
PRP40YKL012W CDC8P00572 216 aa3.86□□□□□ -1.79
PRP40YKL012W SCM4P32564 187 aa3.86□□□□□ -1.79
PRP40YKL012W SKG1P36169 355 aa3.86□□□□□ -1.79
PRP40YKL012W UBC12P52491 188 aa3.86□□□□□ -1.79
PRP40YKL012W YDR249CQ03787 373 aa3.86□□□□□ -1.79
PRP40YKL012W TRM12Q04235 462 aa3.86□□□□□ -1.79
PRP40YKL012W YFR032C-BQ8TGU2 87 aa3.86□□□□□ -1.79
PRP40YKL012W RPL26AP05743 127 aaKnown RBP3.85□□□□□ -1.79
PRP40YKL012W CNB1P25296 175 aa3.85□□□□□ -1.79
PRP40YKL012W SRP14P38985 146 aa3.85□□□□□ -1.79
PRP40YKL012W MRPL49P40858 161 aaPredicted RBP3.85□□□□□ -1.79
PRP40YKL012W RPL26BP53221 127 aaKnown RBP3.85□□□□□ -1.79
PRP40YKL012W PRM15Q03262 622 aa3.85□□□□□ -1.79
PRP40YKL012W YLR036CQ07986 203 aa3.85□□□□□ -1.79
PRP40YKL012W MYO1P08964 1928 aa3.85□□□□□ -1.79
PRP40YKL012W SDH4P37298 181 aa3.84□□□□□ -1.79
PRP40YKL012W YLR460CP54007 376 aa3.84□□□□□ -1.79
PRP40YKL012W MCP1Q12106 302 aa3.84□□□□□ -1.79
PRP40YKL012W YDL085C-AQ3E7B7 68 aaKnown RBP3.84□□□□□ -1.79
PRP40YKL012W GSC2P40989 1895 aa3.84□□□□□ -1.79
PRP40YKL012W MRPS28P21771 286 aa3.84□□□□□ -1.8
PRP40YKL012W YHL026CP38740 315 aa3.83□□□□□ -1.8
PRP40YKL012W YJL144WP47009 104 aa3.83□□□□□ -1.8
PRP40YKL012W JAC1P53193 184 aa3.83□□□□□ -1.8
PRP40YKL012W YNL140CP53910 189 aa3.83□□□□□ -1.8
PRP40YKL012W ARR2Q06597 130 aa3.83□□□□□ -1.8
PRP40YKL012W FLO1P32768 1537 aa3.83□□□□□ -1.8
PRP40YKL012W TRX3P25372 127 aa3.82□□□□□ -1.8
PRP40YKL012W YKR041WP36134 250 aa3.82□□□□□ -1.8
PRP40YKL012W GLE2P40066 365 aa3.82□□□□□ -1.8
PRP40YKL012W RIO1Q12196 484 aaKnown RBP3.82□□□□□ -1.8
PRP40YKL012W MBF1O14467 151 aaKnown RBP3.81□□□□□ -1.8
PRP40YKL012W RPB3P16370 318 aaKnown RBP3.81□□□□□ -1.8
PRP40YKL012W BET1P22804 142 aa3.81□□□□□ -1.8
PRP40YKL012W SCO1P23833 295 aa3.81□□□□□ -1.8
PRP40YKL012W MED6P38782 295 aa3.81□□□□□ -1.8
PRP40YKL012W SNX4P47057 423 aa3.81□□□□□ -1.8
PRP40YKL012W YJR146WP47174 117 aa3.81□□□□□ -1.8
PRP40YKL012W MSW1P04803 379 aa3.81□□□□□ -1.8
PRP40YKL012W SNF4P12904 322 aa3.81□□□□□ -1.8
PRP40YKL012W URA5P13298 226 aaKnown RBP3.81□□□□□ -1.8
PRP40YKL012W SWP1Q02795 286 aa3.81□□□□□ -1.8
PRP40YKL012W YPR096CO13587 100 aa3.8□□□□□ -1.8
PRP40YKL012W PHO13P19881 312 aa3.8□□□□□ -1.8
PRP40YKL012W MGT1P26188 188 aa3.8□□□□□ -1.8
PRP40YKL012W MAK5P38112 773 aaPredicted RBP3.8□□□□□ -1.8
PRP40YKL012W YNL247WP53852 767 aaKnown RBP3.8□□□□□ -1.8
PRP40YKL012W NUF2P33895 451 aa3.79□□□□□ -1.8
PRP40YKL012W YER121WP40076 114 aa3.79□□□□□ -1.8
PRP40YKL012W MNN5P46982 586 aa3.79□□□□□ -1.8
PRP40YKL012W ARP3P47117 449 aaKnown RBP3.79□□□□□ -1.8
PRP40YKL012W DSK2P48510 373 aa3.79□□□□□ -1.8
PRP40YKL012W YMR315WQ04869 349 aaKnown RBP3.79□□□□□ -1.8
PRP40YKL012W TSC3Q3E790 80 aa3.79□□□□□ -1.8
PRP40YKL012W CLG1P35190 452 aa3.79□□□□□ -1.8
PRP40YKL012W FES1P38260 290 aa3.79□□□□□ -1.8
PRP40YKL012W ICE2P40499 491 aa3.79□□□□□ -1.8
PRP40YKL012W PRM10P42946 383 aa3.79□□□□□ -1.8
PRP40YKL012W EFM5P53200 248 aaKnown RBP3.79□□□□□ -1.8
PRP40YKL012W RDS3Q06835 107 aaPredicted RBP3.79□□□□□ -1.8
PRP40YKL012W PET9P18239 318 aaKnown RBP3.78□□□□□ -1.8
PRP40YKL012W YCR090CP25654 182 aaKnown RBP3.78□□□□□ -1.8
PRP40YKL012W AIF1P52923 378 aa3.78□□□□□ -1.8
PRP40YKL012W MHT1Q12525 324 aa3.78□□□□□ -1.8
PRP40YKL012W RPL22AP05749 121 aaKnown RBP3.77□□□□□ -1.81
PRP40YKL012W FMP32P43557 207 aa3.77□□□□□ -1.81
PRP40YKL012W SLM2P53955 656 aa3.77□□□□□ -1.81
PRP40YKL012W BRX1Q08235 291 aaKnown RBP3.77□□□□□ -1.81
PRP40YKL012W VPS68Q12016 184 aa3.77□□□□□ -1.81
Retrieved 100 of 5,963 RNA–protein pairs in 53.7 ms