RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 HDAC7Q8WUI4 952 aa21.02■□□□□ 0.96
SHKBP1-221ENST00000599833 DHTKD1Q96HY7 919 aaPredicted RBP21.02■□□□□ 0.96
SHKBP1-221ENST00000599833 FNBP1Q96RU3 617 aa21.02■□□□□ 0.96
SHKBP1-221ENST00000599833 MKNK1Q9BUB5 465 aa21.02■□□□□ 0.96
SHKBP1-221ENST00000599833 MAN1C1Q9NR34 630 aa21.02■□□□□ 0.96
SHKBP1-221ENST00000599833 DZANK1Q9NVP4 752 aa21.02■□□□□ 0.96
SHKBP1-221ENST00000599833 USP15Q9Y4E8 981 aaPredicted RBP21.02■□□□□ 0.96
SHKBP1-221ENST00000599833 TNNI1P19237 187 aa21.01■□□□□ 0.95
SHKBP1-221ENST00000599833 PNPLA4P41247 253 aa21.01■□□□□ 0.95
SHKBP1-221ENST00000599833 RBP5P82980 135 aa21.01■□□□□ 0.95
SHKBP1-221ENST00000599833 YWHAHQ04917 246 aaPredicted RBP21.01■□□□□ 0.95
SHKBP1-221ENST00000599833 PPP3CAQ08209 521 aa21.01■□□□□ 0.95
SHKBP1-221ENST00000599833 AAK1Q2M2I8 961 aa21.01■□□□□ 0.95
SHKBP1-221ENST00000599833 ZACNQ401N2 412 aa21.01■□□□□ 0.95
SHKBP1-221ENST00000599833 SV2CQ496J9 727 aa21.01■□□□□ 0.95
SHKBP1-221ENST00000599833 DSTYKQ6XUX3 929 aa21.01■□□□□ 0.95
SHKBP1-221ENST00000599833 CMASQ8NFW8 434 aaPredicted RBP21.01■□□□□ 0.95
SHKBP1-221ENST00000599833 OR10T2Q8NGX3 314 aa21.01■□□□□ 0.95
SHKBP1-221ENST00000599833 ZNF707Q96C28 371 aaPredicted RBP21.01■□□□□ 0.95
SHKBP1-221ENST00000599833 ZNF560Q96MR9 790 aa21.01■□□□□ 0.95
SHKBP1-221ENST00000599833 TMEM209Q96SK2 561 aa21.01■□□□□ 0.95
SHKBP1-221ENST00000599833 L1RE1Q9UN81 338 aa21.01■□□□□ 0.95
SHKBP1-221ENST00000599833 CYB561D2O14569 222 aa21■□□□□ 0.95
SHKBP1-221ENST00000599833 RFPL2O75678 378 aa21■□□□□ 0.95
SHKBP1-221ENST00000599833 STAU1O95793 577 aaKnown RBP21■□□□□ 0.95
SHKBP1-221ENST00000599833 TNNC2P02585 160 aa21■□□□□ 0.95
SHKBP1-221ENST00000599833 TRIM49P0CI25 452 aa21■□□□□ 0.95
SHKBP1-221ENST00000599833 TRIM49CP0CI26 452 aa21■□□□□ 0.95
SHKBP1-221ENST00000599833 ODC1P11926 461 aa21■□□□□ 0.95
SHKBP1-221ENST00000599833 RPL13P26373 211 aaKnown RBP21■□□□□ 0.95
SHKBP1-221ENST00000599833 PSMC2P35998 433 aaKnown RBP21■□□□□ 0.95
SHKBP1-221ENST00000599833 WSCD1Q658N2 575 aa21■□□□□ 0.95
SHKBP1-221ENST00000599833 OVOS1Q6IE37 1185 aa21■□□□□ 0.95
SHKBP1-221ENST00000599833 FAM186BQ8IYM0 893 aa21■□□□□ 0.95
SHKBP1-221ENST00000599833 KREMEN2Q8NCW0 462 aa21■□□□□ 0.95
SHKBP1-221ENST00000599833 APOL5Q9BWW9 433 aa21■□□□□ 0.95
SHKBP1-221ENST00000599833 NUP62CLQ9H1M0 184 aa21■□□□□ 0.95
SHKBP1-221ENST00000599833 ADAM7Q9H2U9 754 aa21■□□□□ 0.95
SHKBP1-221ENST00000599833 FRMD4BQ9Y2L6 1034 aa21■□□□□ 0.95
SHKBP1-221ENST00000599833 H7C4K7 107 aa20.99■□□□□ 0.95
SHKBP1-221ENST00000599833 PSMA7O14818 248 aa20.99■□□□□ 0.95
SHKBP1-221ENST00000599833 IKBKBO14920 756 aa20.99■□□□□ 0.95
SHKBP1-221ENST00000599833 KRT19P08727 400 aa20.99■□□□□ 0.95
SHKBP1-221ENST00000599833 SRGAP2BP0DMP2 458 aa20.99■□□□□ 0.95
SHKBP1-221ENST00000599833 PPP1R2P41236 205 aa20.99■□□□□ 0.95
SHKBP1-221ENST00000599833 VAMP7P51809 220 aa20.99■□□□□ 0.95
SHKBP1-221ENST00000599833 MYL6P60660 151 aa20.99■□□□□ 0.95
SHKBP1-221ENST00000599833 FKBP3Q00688 224 aaKnown RBP20.99■□□□□ 0.95
SHKBP1-221ENST00000599833 BFSP1Q12934 665 aa20.99■□□□□ 0.95
SHKBP1-221ENST00000599833 PUS10Q3MIT2 529 aaKnown RBP20.99■□□□□ 0.95
SHKBP1-221ENST00000599833 CTXN3Q4LDR2 81 aa20.99■□□□□ 0.95
SHKBP1-221ENST00000599833 ZNF280DQ6N043 979 aa20.99■□□□□ 0.95
SHKBP1-221ENST00000599833 INTS8Q75QN2 995 aaKnown RBP20.99■□□□□ 0.95
SHKBP1-221ENST00000599833 SV2AQ7L0J3 742 aa20.99■□□□□ 0.95
SHKBP1-221ENST00000599833 OSTM1Q86WC4 334 aa20.99■□□□□ 0.95
SHKBP1-221ENST00000599833 PDCL2Q8N4E4 241 aa20.99■□□□□ 0.95
SHKBP1-221ENST00000599833 NELFBQ8WX92 580 aa20.99■□□□□ 0.95
SHKBP1-221ENST00000599833 PLEKHA4Q9H4M7 779 aa20.99■□□□□ 0.95
SHKBP1-221ENST00000599833 VRTNQ9H8Y1 702 aa20.99■□□□□ 0.95
SHKBP1-221ENST00000599833 SFXN1Q9H9B4 322 aa20.99■□□□□ 0.95
SHKBP1-221ENST00000599833 CTNND2Q9UQB3 1225 aa20.99■□□□□ 0.95
SHKBP1-221ENST00000599833 NME7Q9Y5B8 376 aa20.99■□□□□ 0.95
SHKBP1-221ENST00000599833 GABRDO14764 452 aa20.98■□□□□ 0.95
SHKBP1-221ENST00000599833 CETN3O15182 167 aa20.98■□□□□ 0.95
SHKBP1-221ENST00000599833 SLC16A3O15427 465 aaKnown RBP20.98■□□□□ 0.95
SHKBP1-221ENST00000599833 SEC24AO95486 1093 aa20.98■□□□□ 0.95
SHKBP1-221ENST00000599833 OR4Q2P0C623 313 aa20.98■□□□□ 0.95
SHKBP1-221ENST00000599833 SOWAHAQ2M3V2 549 aa20.98■□□□□ 0.95
SHKBP1-221ENST00000599833 RARS2Q5T160 578 aaKnown RBP20.98■□□□□ 0.95
SHKBP1-221ENST00000599833 KLHL10Q6JEL2 608 aa20.98■□□□□ 0.95
SHKBP1-221ENST00000599833 ZNF461Q8TAF7 563 aa20.98■□□□□ 0.95
SHKBP1-221ENST00000599833 KBTBD7Q8WVZ9 684 aa20.98■□□□□ 0.95
SHKBP1-221ENST00000599833 HPDLQ96IR7 371 aa20.98■□□□□ 0.95
SHKBP1-221ENST00000599833 NECAB3Q96P71 396 aaPredicted RBP20.98■□□□□ 0.95
SHKBP1-221ENST00000599833 PKMYT1Q99640 499 aa20.98■□□□□ 0.95
SHKBP1-221ENST00000599833 RHOBTB2Q9BYZ6 727 aa20.98■□□□□ 0.95
SHKBP1-221ENST00000599833 CRISPLD1Q9H336 500 aa20.98■□□□□ 0.95
SHKBP1-221ENST00000599833 DOCK8Q8NF50 2099 aa20.97■□□□□ 0.95
SHKBP1-221ENST00000599833 ZMYND10O75800 440 aa20.97■□□□□ 0.95
SHKBP1-221ENST00000599833 WEE2P0C1S8 567 aa20.97■□□□□ 0.95
SHKBP1-221ENST00000599833 ATF2P15336 505 aa20.97■□□□□ 0.95
SHKBP1-221ENST00000599833 AP3M2P53677 418 aa20.97■□□□□ 0.95
SHKBP1-221ENST00000599833 ITIH3Q06033 890 aa20.97■□□□□ 0.95
SHKBP1-221ENST00000599833 TMC5Q6UXY8 1006 aa20.97■□□□□ 0.95
SHKBP1-221ENST00000599833 RNF19BQ6ZMZ0 732 aa20.97■□□□□ 0.95
SHKBP1-221ENST00000599833 GPR149Q86SP6 731 aa20.97■□□□□ 0.95
SHKBP1-221ENST00000599833 LRRTM3Q86VH5 581 aa20.97■□□□□ 0.95
SHKBP1-221ENST00000599833 TOP6BLQ8N6T0 577 aa20.97■□□□□ 0.95
SHKBP1-221ENST00000599833 ELMO3Q96BJ8 720 aa20.97■□□□□ 0.95
SHKBP1-221ENST00000599833 TSG101Q99816 390 aa20.97■□□□□ 0.95
SHKBP1-221ENST00000599833 CD320Q9NPF0 282 aa20.97■□□□□ 0.95
SHKBP1-221ENST00000599833 SNX9Q9Y5X1 595 aa20.97■□□□□ 0.95
SHKBP1-221ENST00000599833 PTPRDP23468 1912 aa20.96■□□□□ 0.95
SHKBP1-221ENST00000599833 OR6C75A6NL08 312 aa20.96■□□□□ 0.95
SHKBP1-221ENST00000599833 TULP1O00294 542 aaPredicted RBP20.96■□□□□ 0.95
SHKBP1-221ENST00000599833 HCRTO43612 131 aa20.96■□□□□ 0.95
SHKBP1-221ENST00000599833 LRRN2O75325 713 aa20.96■□□□□ 0.95
SHKBP1-221ENST00000599833 STX17P56962 302 aa20.96■□□□□ 0.95
SHKBP1-221ENST00000599833 PAK1Q13153 545 aa20.96■□□□□ 0.95
SHKBP1-221ENST00000599833 STIM1Q13586 685 aa20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms