RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 ASB2Q96Q27 587 aa15.3■□□□□ 0.04
SHKBP1-217ENST00000598558 MKNK1Q9BUB5 465 aa15.3■□□□□ 0.04
SHKBP1-217ENST00000598558 GDAP2Q9NXN4 497 aa15.3■□□□□ 0.04
SHKBP1-217ENST00000598558 VWA8A3KMH1 1905 aa15.29■□□□□ 0.04
SHKBP1-217ENST00000598558 WDR27A2RRH5 827 aa15.29■□□□□ 0.04
SHKBP1-217ENST00000598558 MBTPS2O43462 519 aa15.29■□□□□ 0.04
SHKBP1-217ENST00000598558 RFPL2O75678 378 aa15.29■□□□□ 0.04
SHKBP1-217ENST00000598558 WEE2P0C1S8 567 aa15.29■□□□□ 0.04
SHKBP1-217ENST00000598558 PPP1R2P41236 205 aa15.29■□□□□ 0.04
SHKBP1-217ENST00000598558 ARPP19P56211 112 aa15.29■□□□□ 0.04
SHKBP1-217ENST00000598558 MRPS5P82675 430 aaKnown RBP15.29■□□□□ 0.04
SHKBP1-217ENST00000598558 ROR1Q01973 937 aa15.29■□□□□ 0.04
SHKBP1-217ENST00000598558 SOWAHAQ2M3V2 549 aa15.29■□□□□ 0.04
SHKBP1-217ENST00000598558 SV2CQ496J9 727 aa15.29■□□□□ 0.04
SHKBP1-217ENST00000598558 FOXR2Q6PJQ5 311 aa15.29■□□□□ 0.04
SHKBP1-217ENST00000598558 INTS8Q75QN2 995 aaKnown RBP15.29■□□□□ 0.04
SHKBP1-217ENST00000598558 FILIP1Q7Z7B0 1213 aa15.29■□□□□ 0.04
SHKBP1-217ENST00000598558 PPFIBP1Q86W92 1011 aa15.29■□□□□ 0.04
SHKBP1-217ENST00000598558 IRF2BP1Q8IU81 584 aa15.29■□□□□ 0.04
SHKBP1-217ENST00000598558 PDCL2Q8N4E4 241 aa15.29■□□□□ 0.04
SHKBP1-217ENST00000598558 MLKLQ8NB16 471 aa15.29■□□□□ 0.04
SHKBP1-217ENST00000598558 KREMEN2Q8NCW0 462 aa15.29■□□□□ 0.04
SHKBP1-217ENST00000598558 ATXN2LQ8WWM7 1075 aaKnown RBP15.29■□□□□ 0.04
SHKBP1-217ENST00000598558 CASP10Q92851 521 aa15.29■□□□□ 0.04
SHKBP1-217ENST00000598558 ZNF560Q96MR9 790 aa15.29■□□□□ 0.04
SHKBP1-217ENST00000598558 SRRTQ9BXP5 876 aaKnown RBP15.29■□□□□ 0.04
SHKBP1-217ENST00000598558 MAN1C1Q9NR34 630 aa15.29■□□□□ 0.04
SHKBP1-217ENST00000598558 CD207Q9UJ71 328 aa15.29■□□□□ 0.04
SHKBP1-217ENST00000598558 POLIQ9UNA4 740 aa15.29■□□□□ 0.04
SHKBP1-217ENST00000598558 NME7Q9Y5B8 376 aa15.29■□□□□ 0.04
SHKBP1-217ENST00000598558 SNX9Q9Y5X1 595 aa15.29■□□□□ 0.04
SHKBP1-217ENST00000598558 H7C4K7 107 aa15.28■□□□□ 0.04
SHKBP1-217ENST00000598558 IKBKBO14920 756 aa15.28■□□□□ 0.04
SHKBP1-217ENST00000598558 SLC16A3O15427 465 aaKnown RBP15.28■□□□□ 0.04
SHKBP1-217ENST00000598558 ABLIM3O94929 683 aa15.28■□□□□ 0.04
SHKBP1-217ENST00000598558 SEC24AO95486 1093 aa15.28■□□□□ 0.04
SHKBP1-217ENST00000598558 MBD3O95983 291 aa15.28■□□□□ 0.04
SHKBP1-217ENST00000598558 GLUD1P00367 558 aa15.28■□□□□ 0.04
SHKBP1-217ENST00000598558 ODC1P11926 461 aa15.28■□□□□ 0.04
SHKBP1-217ENST00000598558 IL9P15248 144 aa15.28■□□□□ 0.04
SHKBP1-217ENST00000598558 PAX3P23760 479 aa15.28■□□□□ 0.04
SHKBP1-217ENST00000598558 PNPLA4P41247 253 aa15.28■□□□□ 0.04
SHKBP1-217ENST00000598558 YWHAHQ04917 246 aaPredicted RBP15.28■□□□□ 0.04
SHKBP1-217ENST00000598558 CCDC142Q17RM4 750 aa15.28■□□□□ 0.04
SHKBP1-217ENST00000598558 RARS2Q5T160 578 aaKnown RBP15.28■□□□□ 0.04
SHKBP1-217ENST00000598558 OVOS1Q6IE37 1185 aa15.28■□□□□ 0.04
SHKBP1-217ENST00000598558 PDXDC1Q6P996 788 aa15.28■□□□□ 0.04
SHKBP1-217ENST00000598558 LRRTM3Q86VH5 581 aa15.28■□□□□ 0.04
SHKBP1-217ENST00000598558 SMRP1Q8NCR6 262 aa15.28■□□□□ 0.04
SHKBP1-217ENST00000598558 TAS1R2Q8TE23 839 aa15.28■□□□□ 0.04
SHKBP1-217ENST00000598558 KBTBD7Q8WVZ9 684 aa15.28■□□□□ 0.04
SHKBP1-217ENST00000598558 SEMA4DQ92854 862 aa15.28■□□□□ 0.04
SHKBP1-217ENST00000598558 CEP63Q96MT8 703 aa15.28■□□□□ 0.04
SHKBP1-217ENST00000598558 CRISPLD1Q9H336 500 aa15.28■□□□□ 0.04
SHKBP1-217ENST00000598558 MMRN2Q9H8L6 949 aa15.28■□□□□ 0.04
SHKBP1-217ENST00000598558 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.28■□□□□ 0.04
SHKBP1-217ENST00000598558 RWDD2AQ9UIY3 292 aa15.28■□□□□ 0.04
SHKBP1-217ENST00000598558 FBXW11Q9UKB1 542 aa15.28■□□□□ 0.04
SHKBP1-217ENST00000598558 PHACTR2O75167 634 aa15.27■□□□□ 0.04
SHKBP1-217ENST00000598558 HLA-DRAP01903 254 aa15.27■□□□□ 0.04
SHKBP1-217ENST00000598558 EPB41P11171 864 aaKnown RBP15.27■□□□□ 0.04
SHKBP1-217ENST00000598558 KRT13P13646 458 aa15.27■□□□□ 0.04
SHKBP1-217ENST00000598558 AP3M2P53677 418 aa15.27■□□□□ 0.04
SHKBP1-217ENST00000598558 CREMQ03060 361 aa15.27■□□□□ 0.04
SHKBP1-217ENST00000598558 ENPEPQ07075 957 aa15.27■□□□□ 0.04
SHKBP1-217ENST00000598558 BIRC3Q13489 604 aa15.27■□□□□ 0.04
SHKBP1-217ENST00000598558 NCOA4Q13772 614 aa15.27■□□□□ 0.04
SHKBP1-217ENST00000598558 CBWD6Q4V339 395 aa15.27■□□□□ 0.04
SHKBP1-217ENST00000598558 CBWD3Q5JTY5 395 aa15.27■□□□□ 0.04
SHKBP1-217ENST00000598558 CBWD5Q5RIA9 395 aa15.27■□□□□ 0.04
SHKBP1-217ENST00000598558 SPOPLQ6IQ16 392 aa15.27■□□□□ 0.04
SHKBP1-217ENST00000598558 PTCRAQ6ISU1 281 aaPredicted RBP15.27■□□□□ 0.04
SHKBP1-217ENST00000598558 ZNF280DQ6N043 979 aa15.27■□□□□ 0.04
SHKBP1-217ENST00000598558 TMC5Q6UXY8 1006 aa15.27■□□□□ 0.04
SHKBP1-217ENST00000598558 RNF19BQ6ZMZ0 732 aa15.27■□□□□ 0.04
SHKBP1-217ENST00000598558 USP37Q86T82 979 aa15.27■□□□□ 0.04
SHKBP1-217ENST00000598558 SUSD6Q92537 303 aa15.27■□□□□ 0.04
SHKBP1-217ENST00000598558 SLC35C1Q96A29 364 aa15.27■□□□□ 0.04
SHKBP1-217ENST00000598558 ZNF707Q96C28 371 aaPredicted RBP15.27■□□□□ 0.04
SHKBP1-217ENST00000598558 MRPL45Q9BRJ2 306 aaKnown RBP15.27■□□□□ 0.04
SHKBP1-217ENST00000598558 PI4K2AQ9BTU6 479 aa15.27■□□□□ 0.04
SHKBP1-217ENST00000598558 SDCBP2Q9H190 292 aa15.27■□□□□ 0.04
SHKBP1-217ENST00000598558 APOBEC3GQ9HC16 384 aaKnown RBP15.27■□□□□ 0.04
SHKBP1-217ENST00000598558 TMLHEQ9NVH6 421 aa15.27■□□□□ 0.04
SHKBP1-217ENST00000598558 USP15Q9Y4E8 981 aaPredicted RBP15.27■□□□□ 0.04
SHKBP1-217ENST00000598558 SCN1AP35498 2009 aa15.27■□□□□ 0.03
SHKBP1-217ENST00000598558 BICDL2A1A5D9 508 aa15.26■□□□□ 0.03
SHKBP1-217ENST00000598558 GABRDO14764 452 aa15.26■□□□□ 0.03
SHKBP1-217ENST00000598558 STAU1O95793 577 aaKnown RBP15.26■□□□□ 0.03
SHKBP1-217ENST00000598558 C1RP00736 705 aa15.26■□□□□ 0.03
SHKBP1-217ENST00000598558 LMO2P25791 158 aa15.26■□□□□ 0.03
SHKBP1-217ENST00000598558 CDH8P55286 799 aa15.26■□□□□ 0.03
SHKBP1-217ENST00000598558 MYO1EQ12965 1108 aa15.26■□□□□ 0.03
SHKBP1-217ENST00000598558 TRPC3Q13507 836 aa15.26■□□□□ 0.03
SHKBP1-217ENST00000598558 WDR72Q3MJ13 1102 aa15.26■□□□□ 0.03
SHKBP1-217ENST00000598558 CCDC183Q5T5S1 534 aa15.26■□□□□ 0.03
SHKBP1-217ENST00000598558 ZNF461Q8TAF7 563 aa15.26■□□□□ 0.03
SHKBP1-217ENST00000598558 LPIN3Q9BQK8 851 aa15.26■□□□□ 0.03
SHKBP1-217ENST00000598558 ZCWPW1Q9H0M4 648 aa15.26■□□□□ 0.03
SHKBP1-217ENST00000598558 ADAM7Q9H2U9 754 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms