RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 GOLGA6DP0CG33 693 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 CTSAP10619 480 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 HSPD1P10809 573 aaKnown RBP4.52□□□□□ -1.69
LIG3-211ENST00000588713 TIMP2P16035 220 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 BMP6P22004 513 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 FSHRP23945 695 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 CALRP27797 417 aaKnown RBP4.52□□□□□ -1.69
LIG3-211ENST00000588713 HOXC8P31273 242 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 GBP1P32455 592 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 ZAP70P43403 619 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 MRPL12P52815 198 aaKnown RBP4.52□□□□□ -1.69
LIG3-211ENST00000588713 ADKP55263 362 aaKnown RBP4.52□□□□□ -1.69
LIG3-211ENST00000588713 GOLGA8FQ08AF8 430 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 GOLGA8DPQ0D2H9 430 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 NFATC3Q12968 1075 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 TRIM29Q14134 588 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 GIT2Q14161 759 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 NEDD9Q14511 834 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 MTF1Q14872 753 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 AGERQ15109 404 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 HSDL1Q3SXM5 330 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 SPATA1Q5VX52 437 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 SLFN13Q68D06 897 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 DESI1Q6ICB0 168 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 APTXQ7Z2E3 356 aaKnown RBP4.52□□□□□ -1.69
LIG3-211ENST00000588713 PIP4P1Q86T03 277 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 ABI1Q8IZP0 508 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 HDDC3Q8N4P3 179 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 CMASQ8NFW8 434 aaPredicted RBP4.52□□□□□ -1.69
LIG3-211ENST00000588713 NCOA7Q8NI08 942 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 AENQ8WTP8 325 aaKnown RBP4.52□□□□□ -1.69
LIG3-211ENST00000588713 DNAJB3Q8WWF6 145 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 WASF1Q92558 559 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 CAVIN3Q969G5 261 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 CAMK1GQ96NX5 476 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 SH3GL2Q99962 352 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 RHOXF2Q9BQY4 288 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 PYM1Q9BRP8 204 aaKnown RBP4.52□□□□□ -1.69
LIG3-211ENST00000588713 SELENOOQ9BVL4 669 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 CRNKL1Q9BZJ0 848 aaKnown RBP4.52□□□□□ -1.69
LIG3-211ENST00000588713 FAM49AQ9H0Q0 323 aaPredicted RBP4.52□□□□□ -1.69
LIG3-211ENST00000588713 HAUS4Q9H6D7 363 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 ATP6V0A4Q9HBG4 840 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 DCP1AQ9NPI6 582 aaPredicted RBP4.52□□□□□ -1.69
LIG3-211ENST00000588713 ABHD10Q9NUJ1 306 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 GOLGA6AQ9NYA3 693 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 KCNH3Q9ULD8 1083 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 MYO6Q9UM54 1294 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 CEP131Q9UPN4 1083 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 PCDHB9Q9Y5E1 797 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 PCDHA5Q9Y5H7 936 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 FAM169AQ9Y6X4 670 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 NBPF19A0A087WUL8 3843 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 CCDC194A0A1B0GVG4 234 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 FAM149AA5PLN7 773 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 M0QZ92 97 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 SH2B2O14492 632 aaPredicted RBP4.51□□□□□ -1.69
LIG3-211ENST00000588713 CHUKO15111 745 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 RNF113AO15541 343 aaKnown RBP4.51□□□□□ -1.69
LIG3-211ENST00000588713 MAN1A2O60476 641 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 MGEA5O60502 916 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 RHOBTB1O94844 696 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 BMP15O95972 392 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 LGALS2P05162 132 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 CNPP09543 421 aaKnown RBP4.51□□□□□ -1.69
LIG3-211ENST00000588713 SPATA31D3P0C874 917 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 CHRNB1P11230 501 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 LORP23490 312 aaPredicted RBP4.51□□□□□ -1.69
LIG3-211ENST00000588713 BRD2P25440 801 aaKnown RBP4.51□□□□□ -1.69
LIG3-211ENST00000588713 CDC27P30260 824 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 HNRNPH1P31943 449 aaKnown RBP4.51□□□□□ -1.69
LIG3-211ENST00000588713 CCT5P48643 541 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 MNAT1P51948 309 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 RCAN1P53805 252 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 ATXN3P54252 364 aaPredicted RBP4.51□□□□□ -1.69
LIG3-211ENST00000588713 RPS6P62753 249 aaKnown RBP4.51□□□□□ -1.69
LIG3-211ENST00000588713 MRPS6P82932 125 aaKnown RBP4.51□□□□□ -1.69
LIG3-211ENST00000588713 NFKB2Q00653 900 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 LMAN2Q12907 356 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 SEMA3BQ13214 749 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 CUL4BQ13620 913 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 SART3Q15020 963 aaKnown RBP4.51□□□□□ -1.69
LIG3-211ENST00000588713 TRIP6Q15654 476 aaKnown RBP4.51□□□□□ -1.69
LIG3-211ENST00000588713 PREPLQ4J6C6 727 aaPredicted RBP4.51□□□□□ -1.69
LIG3-211ENST00000588713 RILPL1Q5EBL4 403 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 TRIM61Q5EBN2 209 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 C6orf118Q5T5N4 469 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 SYDE2Q5VT97 1194 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 PAPD7Q5XG87 772 aaKnown RBP4.51□□□□□ -1.69
LIG3-211ENST00000588713 TAF2Q6P1X5 1199 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 EMBQ6PCB8 327 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 ELMSAN1Q6PJG2 1045 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 SPATA31D4Q6ZUB0 917 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 KCTD1Q719H9 257 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 CYP2U1Q7Z449 544 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 FAM160B2Q86V87 743 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 TAX1BP1Q86VP1 789 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 TMEM173Q86WV6 379 aaPredicted RBP4.51□□□□□ -1.69
LIG3-211ENST00000588713 TRIM50Q86XT4 487 aa4.51□□□□□ -1.69
LIG3-211ENST00000588713 NOA1Q8NC60 698 aaKnown RBP4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms