RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 DNAJC25Q9H1X3 360 aa17.71■□□□□ 0.43
CLK3-223ENST00000568488 GKN1Q9NS71 199 aa17.71■□□□□ 0.43
CLK3-223ENST00000568488 TPCN1Q9ULQ1 816 aa17.71■□□□□ 0.43
CLK3-223ENST00000568488 INVSQ9Y283 1065 aa17.71■□□□□ 0.43
CLK3-223ENST00000568488 SLC27A5Q9Y2P5 690 aa17.71■□□□□ 0.43
CLK3-223ENST00000568488 HYAL3O43820 417 aaPredicted RBP17.7■□□□□ 0.42
CLK3-223ENST00000568488 EGFP01133 1207 aa17.7■□□□□ 0.42
CLK3-223ENST00000568488 GABRR2P28476 465 aa17.7■□□□□ 0.42
CLK3-223ENST00000568488 HSPA4P34932 840 aa17.7■□□□□ 0.42
CLK3-223ENST00000568488 GRM5P41594 1212 aa17.7■□□□□ 0.42
CLK3-223ENST00000568488 TOB2Q14106 344 aaPredicted RBP17.7■□□□□ 0.42
CLK3-223ENST00000568488 KARSQ15046 597 aaKnown RBP17.7■□□□□ 0.42
CLK3-223ENST00000568488 PPP2R5AQ15172 486 aa17.7■□□□□ 0.42
CLK3-223ENST00000568488 XKR4Q5GH76 650 aa17.7■□□□□ 0.42
CLK3-223ENST00000568488 BMP2KLQ5H9B9 411 aa17.7■□□□□ 0.42
CLK3-223ENST00000568488 TMEM196Q5HYL7 178 aa17.7■□□□□ 0.42
CLK3-223ENST00000568488 PADI6Q6TGC4 694 aa17.7■□□□□ 0.42
CLK3-223ENST00000568488 GAREM2Q75VX8 874 aa17.7■□□□□ 0.42
CLK3-223ENST00000568488 DNAJB7Q7Z6W7 309 aaPredicted RBP17.7■□□□□ 0.42
CLK3-223ENST00000568488 IFT74Q96LB3 600 aa17.7■□□□□ 0.42
CLK3-223ENST00000568488 CRISPLD1Q9H336 500 aa17.7■□□□□ 0.42
CLK3-223ENST00000568488 OBP2AQ9NY56 170 aa17.7■□□□□ 0.42
CLK3-223ENST00000568488 TIMM13Q9Y5L4 95 aaPredicted RBP17.7■□□□□ 0.42
CLK3-223ENST00000568488 ATG2BQ96BY7 2078 aa17.7■□□□□ 0.42
CLK3-223ENST00000568488 K7ERI5 159 aa17.69■□□□□ 0.42
CLK3-223ENST00000568488 TAF4O00268 1085 aa17.69■□□□□ 0.42
CLK3-223ENST00000568488 DTNBO60941 627 aa17.69■□□□□ 0.42
CLK3-223ENST00000568488 PRAMEF12O95522 483 aa17.69■□□□□ 0.42
CLK3-223ENST00000568488 EFNA5P52803 228 aa17.69■□□□□ 0.42
CLK3-223ENST00000568488 NACC1Q96RE7 527 aa17.69■□□□□ 0.42
CLK3-223ENST00000568488 SMG9Q9H0W8 520 aaKnown RBP17.69■□□□□ 0.42
CLK3-223ENST00000568488 PCDHB8Q9UN66 801 aa17.69■□□□□ 0.42
CLK3-223ENST00000568488 TNFSF13BQ9Y275 285 aa17.69■□□□□ 0.42
CLK3-223ENST00000568488 NEUROG3Q9Y4Z2 214 aa17.69■□□□□ 0.42
CLK3-223ENST00000568488 DMXL2Q8TDJ6 3036 aa17.68■□□□□ 0.42
CLK3-223ENST00000568488 ARHGEF35A5YM69 484 aa17.68■□□□□ 0.42
CLK3-223ENST00000568488 PATE3B3GLJ2 98 aa17.68■□□□□ 0.42
CLK3-223ENST00000568488 CDX4O14627 284 aaPredicted RBP17.68■□□□□ 0.42
CLK3-223ENST00000568488 CDC45O75419 566 aa17.68■□□□□ 0.42
CLK3-223ENST00000568488 VNN2O95498 520 aa17.68■□□□□ 0.42
CLK3-223ENST00000568488 SPATA31C1P0DKV0 1188 aa17.68■□□□□ 0.42
CLK3-223ENST00000568488 CYP11B2P19099 503 aa17.68■□□□□ 0.42
CLK3-223ENST00000568488 MCM2P49736 904 aa17.68■□□□□ 0.42
CLK3-223ENST00000568488 DGKEP52429 567 aa17.68■□□□□ 0.42
CLK3-223ENST00000568488 IRX6P78412 446 aaPredicted RBP17.68■□□□□ 0.42
CLK3-223ENST00000568488 CYP4F8P98187 520 aa17.68■□□□□ 0.42
CLK3-223ENST00000568488 YWHAHQ04917 246 aaPredicted RBP17.68■□□□□ 0.42
CLK3-223ENST00000568488 NR5A1Q13285 461 aa17.68■□□□□ 0.42
CLK3-223ENST00000568488 RUNX3Q13761 415 aa17.68■□□□□ 0.42
CLK3-223ENST00000568488 ZNF568Q3ZCX4 644 aa17.68■□□□□ 0.42
CLK3-223ENST00000568488 CATSPER3Q86XQ3 398 aa17.68■□□□□ 0.42
CLK3-223ENST00000568488 ZNF274Q96GC6 653 aaPredicted RBP17.68■□□□□ 0.42
CLK3-223ENST00000568488 ACAP3Q96P50 834 aa17.68■□□□□ 0.42
CLK3-223ENST00000568488 TCHPQ9BT92 498 aa17.68■□□□□ 0.42
CLK3-223ENST00000568488 CDT1Q9H211 546 aa17.68■□□□□ 0.42
CLK3-223ENST00000568488 DAXXQ9UER7 740 aaPredicted RBP17.68■□□□□ 0.42
CLK3-223ENST00000568488 KLK13Q9UKR3 277 aa17.68■□□□□ 0.42
CLK3-223ENST00000568488 KIF26AQ9ULI4 1882 aaPredicted RBP17.68■□□□□ 0.42
CLK3-223ENST00000568488 TRDMT1O14717 391 aaKnown RBP17.67■□□□□ 0.42
CLK3-223ENST00000568488 MED24O75448 989 aa17.67■□□□□ 0.42
CLK3-223ENST00000568488 SOAT2O75908 522 aa17.67■□□□□ 0.42
CLK3-223ENST00000568488 APBB3O95704 486 aa17.67■□□□□ 0.42
CLK3-223ENST00000568488 FGF19O95750 216 aa17.67■□□□□ 0.42
CLK3-223ENST00000568488 HARSP12081 509 aaKnown RBP17.67■□□□□ 0.42
CLK3-223ENST00000568488 KCNE1P15382 129 aa17.67■□□□□ 0.42
CLK3-223ENST00000568488 TRIM68Q6AZZ1 485 aa17.67■□□□□ 0.42
CLK3-223ENST00000568488 C19orf48Q6RUI8 117 aa17.67■□□□□ 0.42
CLK3-223ENST00000568488 RUFY3Q7L099 469 aa17.67■□□□□ 0.42
CLK3-223ENST00000568488 USP37Q86T82 979 aa17.67■□□□□ 0.42
CLK3-223ENST00000568488 SKAP1Q86WV1 359 aa17.67■□□□□ 0.42
CLK3-223ENST00000568488 BEST2Q8NFU1 509 aa17.67■□□□□ 0.42
CLK3-223ENST00000568488 RPLP0P6Q8NHW5 317 aa17.67■□□□□ 0.42
CLK3-223ENST00000568488 EBF3Q9H4W6 596 aa17.67■□□□□ 0.42
CLK3-223ENST00000568488 SLC32A1Q9H598 525 aa17.67■□□□□ 0.42
CLK3-223ENST00000568488 TASP1Q9H6P5 420 aa17.67■□□□□ 0.42
CLK3-223ENST00000568488 FBRSL1Q9HCM7 1045 aaKnown RBP17.67■□□□□ 0.42
CLK3-223ENST00000568488 TUFT1Q9NNX1 390 aa17.67■□□□□ 0.42
CLK3-223ENST00000568488 ASB3Q9Y575 518 aa17.67■□□□□ 0.42
CLK3-223ENST00000568488 EML5Q05BV3 1969 aa17.67■□□□□ 0.42
CLK3-223ENST00000568488 NEMFO60524 1076 aa17.66■□□□□ 0.42
CLK3-223ENST00000568488 U2AF2P26368 475 aaKnown RBP eCLIP17.66■□□□□ 0.423e-6■■□□□ 13
CLK3-223ENST00000568488 GALK1P51570 392 aa17.66■□□□□ 0.42
CLK3-223ENST00000568488 IRX4P78413 519 aa17.66■□□□□ 0.42
CLK3-223ENST00000568488 AMPD2Q01433 879 aa17.66■□□□□ 0.42
CLK3-223ENST00000568488 PSMD2Q13200 908 aa17.66■□□□□ 0.42
CLK3-223ENST00000568488 GPR17Q13304 367 aa17.66■□□□□ 0.42
CLK3-223ENST00000568488 CENPPQ6IPU0 288 aa17.66■□□□□ 0.42
CLK3-223ENST00000568488 CYP2U1Q7Z449 544 aa17.66■□□□□ 0.42
CLK3-223ENST00000568488 ITIH5Q86UX2 942 aa17.66■□□□□ 0.42
CLK3-223ENST00000568488 ATAD1Q8NBU5 361 aa17.66■□□□□ 0.42
CLK3-223ENST00000568488 PSMG2Q969U7 264 aa17.66■□□□□ 0.42
CLK3-223ENST00000568488 ACO2Q99798 780 aaKnown RBP17.66■□□□□ 0.42
CLK3-223ENST00000568488 HPS4Q9NQG7 708 aa17.66■□□□□ 0.42
CLK3-223ENST00000568488 MSRB2Q9Y3D2 182 aa17.66■□□□□ 0.42
CLK3-223ENST00000568488 OTOL1A6NHN0 477 aaPredicted RBP17.65■□□□□ 0.42
CLK3-223ENST00000568488 CCDC169A6NNP5 214 aa17.65■□□□□ 0.42
CLK3-223ENST00000568488 CDKL5O76039 1030 aa17.65■□□□□ 0.42
CLK3-223ENST00000568488 ZIC2O95409 532 aaPredicted RBP17.65■□□□□ 0.42
CLK3-223ENST00000568488 DRD1P21728 446 aa17.65■□□□□ 0.42
CLK3-223ENST00000568488 KRT2P35908 639 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms