RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 HELQQ8TDG4 1101 aa14.05□□□□□ -0.16
VPS4A-204ENST00000566354 N4BP2L2Q92802 583 aaPredicted RBP14.05□□□□□ -0.16
VPS4A-204ENST00000566354 SEMA4DQ92854 862 aa14.05□□□□□ -0.16
VPS4A-204ENST00000566354 NT5C1BQ96P26 610 aa14.05□□□□□ -0.16
VPS4A-204ENST00000566354 FGFR1OP2Q9NVK5 253 aa14.05□□□□□ -0.16
VPS4A-204ENST00000566354 WDR81Q562E7 1941 aa14.05□□□□□ -0.16
VPS4A-204ENST00000566354 STRNO43815 780 aa14.04□□□□□ -0.16
VPS4A-204ENST00000566354 LYPLA2O95372 231 aa14.04□□□□□ -0.16
VPS4A-204ENST00000566354 ADRB2P07550 413 aa14.04□□□□□ -0.16
VPS4A-204ENST00000566354 QARSP47897 775 aaKnown RBP14.04□□□□□ -0.16
VPS4A-204ENST00000566354 GRB14Q14449 540 aa14.04□□□□□ -0.16
VPS4A-204ENST00000566354 NUGGCQ68CJ6 796 aa14.04□□□□□ -0.16
VPS4A-204ENST00000566354 RINLQ6ZS11 566 aa14.04□□□□□ -0.16
VPS4A-204ENST00000566354 OTUD6AQ7L8S5 288 aa14.04□□□□□ -0.16
VPS4A-204ENST00000566354 PLEKHH3Q7Z736 793 aa14.04□□□□□ -0.16
VPS4A-204ENST00000566354 FBXO16Q8IX29 292 aaPredicted RBP14.04□□□□□ -0.16
VPS4A-204ENST00000566354 MGARPQ8TDB4 240 aa14.04□□□□□ -0.16
VPS4A-204ENST00000566354 CKAP2Q8WWK9 683 aa14.04□□□□□ -0.16
VPS4A-204ENST00000566354 DDX1Q92499 740 aaKnown RBP14.04□□□□□ -0.16
VPS4A-204ENST00000566354 CDHR1Q96JP9 859 aa14.04□□□□□ -0.16
VPS4A-204ENST00000566354 FAM81BQ96LP2 452 aa14.04□□□□□ -0.16
VPS4A-204ENST00000566354 TMEM8AQ9HCN3 771 aa14.04□□□□□ -0.16
VPS4A-204ENST00000566354 AGAP1Q9UPQ3 857 aa14.04□□□□□ -0.16
VPS4A-204ENST00000566354 EXOC7Q9UPT5 735 aa14.04□□□□□ -0.16
VPS4A-204ENST00000566354 ARL2BPQ9Y2Y0 163 aa14.04□□□□□ -0.16
VPS4A-204ENST00000566354 NQO1P15559 274 aaKnown RBP14.04□□□□□ -0.16
VPS4A-204ENST00000566354 MAPK4P31152 587 aa14.04□□□□□ -0.16
VPS4A-204ENST00000566354 ICAM3P32942 547 aa14.04□□□□□ -0.16
VPS4A-204ENST00000566354 SLC1A1P43005 524 aa14.04□□□□□ -0.16
VPS4A-204ENST00000566354 SNX1Q13596 522 aa14.04□□□□□ -0.16
VPS4A-204ENST00000566354 DEFB115Q30KQ5 88 aa14.04□□□□□ -0.16
VPS4A-204ENST00000566354 ABRAQ8N0Z2 381 aa14.04□□□□□ -0.16
VPS4A-204ENST00000566354 PARD3BQ8TEW8 1205 aa14.04□□□□□ -0.16
VPS4A-204ENST00000566354 TRAIPQ9BWF2 469 aa14.04□□□□□ -0.16
VPS4A-204ENST00000566354 ZFYVE28Q9HCC9 887 aa14.04□□□□□ -0.16
VPS4A-204ENST00000566354 KCNK9Q9NPC2 374 aa14.04□□□□□ -0.16
VPS4A-204ENST00000566354 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.04□□□□□ -0.16
VPS4A-204ENST00000566354 A0A1B0GUA9 196 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 GOLGA8IPA6NC78 632 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 GOLGA8JA6NMD2 632 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 SLC16A4O15374 487 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 GJB6O95452 261 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 CREB1P16220 341 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 CHKAP35790 457 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 ITGA8P53708 1063 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 NCKAP1LP55160 1127 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 NCALDP61601 193 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 KRT76Q01546 638 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 BNIP1Q12981 228 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 KYNUQ16719 465 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 UGCGQ16739 394 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 CLEC16AQ2KHT3 1053 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 DPP9Q86TI2 863 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 CBWD2Q8IUF1 395 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 FBXL13Q8NEE6 735 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 ATL2Q8NHH9 583 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 CCDC127Q96BQ5 260 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 CAPNS2Q96L46 248 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 JPH1Q9HDC5 661 aaPredicted RBP14.03□□□□□ -0.16
VPS4A-204ENST00000566354 CHST7Q9NS84 486 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 ANAPC7Q9UJX3 599 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 ANAPC5Q9UJX4 755 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 THAP12O43422 761 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 ARIH2O95376 493 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 BRAFP15056 766 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 ATF2P15336 505 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 UBA1P22314 1058 aaKnown RBP14.03□□□□□ -0.16
VPS4A-204ENST00000566354 YWHABP31946 246 aaKnown RBP14.03□□□□□ -0.16
VPS4A-204ENST00000566354 PEX3P56589 373 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 COPS2P61201 443 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 TLDC1Q6P9B6 456 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 ARMCX2Q7L311 632 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 SPATA21Q7Z572 469 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 USP37Q86T82 979 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 TMC2Q8TDI7 906 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 TBC1D31Q96DN5 1066 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 ECT2Q9H8V3 914 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 EBF2Q9HAK2 575 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 CREBZFQ9NS37 354 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 RAB20Q9NX57 234 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 NFASCO94856 1347 aa14.03□□□□□ -0.16
VPS4A-204ENST00000566354 WDR64B1ANS9 1081 aa14.02□□□□□ -0.16
VPS4A-204ENST00000566354 ALADP13716 330 aa14.02□□□□□ -0.16
VPS4A-204ENST00000566354 SCP2P22307 547 aa14.02□□□□□ -0.16
VPS4A-204ENST00000566354 ADSSP30520 456 aa14.02□□□□□ -0.16
VPS4A-204ENST00000566354 GTF2H1P32780 548 aa14.02□□□□□ -0.16
VPS4A-204ENST00000566354 ADCY8P40145 1251 aa14.02□□□□□ -0.16
VPS4A-204ENST00000566354 APLP1P51693 650 aa14.02□□□□□ -0.16
VPS4A-204ENST00000566354 CENPCQ03188 943 aa14.02□□□□□ -0.16
VPS4A-204ENST00000566354 NOGQ13253 232 aa14.02□□□□□ -0.16
VPS4A-204ENST00000566354 LLGL1Q15334 1064 aa14.02□□□□□ -0.16
VPS4A-204ENST00000566354 LY6KQ17RY6 165 aa14.02□□□□□ -0.16
VPS4A-204ENST00000566354 TMEM63BQ5T3F8 832 aa14.02□□□□□ -0.16
VPS4A-204ENST00000566354 ARHGEF18Q6ZSZ5 1173 aa14.02□□□□□ -0.16
VPS4A-204ENST00000566354 ENOSF1Q7L5Y1 443 aa14.02□□□□□ -0.16
VPS4A-204ENST00000566354 TRMT1LQ7Z2T5 733 aaKnown RBP14.02□□□□□ -0.16
VPS4A-204ENST00000566354 ANKRD42Q8N9B4 389 aa14.02□□□□□ -0.16
VPS4A-204ENST00000566354 BBOF1Q8ND07 529 aa14.02□□□□□ -0.16
VPS4A-204ENST00000566354 IFT74Q96LB3 600 aa14.02□□□□□ -0.16
VPS4A-204ENST00000566354 MPHOSPH6Q99547 160 aaKnown RBP14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms