RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 STK32AQ8WU08 396 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 SCG3Q8WXD2 468 aaKnown RBP7.48□□□□□ -1.21
USP3-210ENST00000559192 MKNK1Q9BUB5 465 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 POLR3CQ9BUI4 534 aaPredicted RBP7.48□□□□□ -1.21
USP3-210ENST00000559192 EFHD1Q9BUP0 239 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 WARS2Q9UGM6 360 aaKnown RBP7.48□□□□□ -1.21
USP3-210ENST00000559192 TISP43B9A030 160 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 MED7O43513 233 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 SUPT3HO75486 399 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 UPP2O95045 317 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 NDUFB10O96000 172 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 MYL2P10916 166 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 PTPN4P29074 926 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 DAB2P98082 770 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 MED21Q13503 144 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 RRP1BQ14684 758 aaKnown RBP7.47□□□□□ -1.21
USP3-210ENST00000559192 THEMIS2Q5TEJ8 643 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 IZUMO2Q6UXV1 221 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 EXOC3L1Q86VI1 746 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 TMEM35BQ8NCS4 154 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 SLC7A3Q8WY07 619 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 HES6Q96HZ4 224 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 ZNF668Q96K58 619 aaPredicted RBP7.47□□□□□ -1.21
USP3-210ENST00000559192 GPRC5CQ9NQ84 441 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 DDX56Q9NY93 547 aaKnown RBP7.47□□□□□ -1.21
USP3-210ENST00000559192 CYP39A1Q9NYL5 469 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 GABBR1Q9UBS5 961 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 GTF3C4Q9UKN8 822 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 K7ERI5 159 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 PSAPP07602 524 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 BGNP21810 368 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 RPA3P35244 121 aaPredicted RBP7.47□□□□□ -1.21
USP3-210ENST00000559192 DLG4P78352 724 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 ZNF200P98182 395 aaPredicted RBP7.47□□□□□ -1.21
USP3-210ENST00000559192 XRCC4Q13426 336 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 CYTH1Q15438 398 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 LACTB2Q53H82 288 aaPredicted RBP7.47□□□□□ -1.21
USP3-210ENST00000559192 CDC42EP5Q6NZY7 148 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 CBWD2Q8IUF1 395 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 HAS1Q92839 578 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 MTBPQ96DY7 904 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 SERPINI1Q99574 410 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 DCLK3Q9C098 648 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 NGRNQ9NPE2 291 aaKnown RBP7.47□□□□□ -1.21
USP3-210ENST00000559192 ASTN1O14525 1302 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 GPR75-ASB3A0A0A6YYF3 556 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 BTNL10A8MVZ5 291 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 MEI4A8MW99 385 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 NKRFO15226 690 aaKnown RBP eCLIP7.47□□□□□ -1.216e-7■■□□□ 13.1
USP3-210ENST00000559192 MMP13P45452 471 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 NFX1Q12986 1120 aaKnown RBP7.47□□□□□ -1.21
USP3-210ENST00000559192 RABGAP1LQ5R372 815 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 SPOPLQ6IQ16 392 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 SWSAP1Q6NVH7 229 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 PPP1R2P3Q6NXS1 205 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 SESTD1Q86VW0 696 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 EIF1ADQ8N9N8 165 aaKnown RBP7.47□□□□□ -1.21
USP3-210ENST00000559192 FAM71DQ8N9W8 422 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 ZNF341Q9BYN7 854 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 TRPV6Q9H1D0 765 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 DCLRE1BQ9H816 532 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 RBAKQ9NYW8 714 aaPredicted RBP7.47□□□□□ -1.21
USP3-210ENST00000559192 SUGT1Q9Y2Z0 365 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 KIF1AQ12756 1690 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 NID2Q14112 1375 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 ACADSP16219 412 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 OSBPP22059 807 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 SERPINB3P29508 390 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 MTFR1Q15390 333 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 TRIP10Q15642 601 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 GRIK5Q16478 980 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 ISLR2Q6UXK2 745 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 THNSL1Q8IYQ7 743 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 DNAAF3Q8N9W5 541 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 TTC13Q8NBP0 860 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 RBBP8NLQ8NC74 664 aaPredicted RBP7.47□□□□□ -1.21
USP3-210ENST00000559192 FBXO36Q8NEA4 188 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 PARD3BQ8TEW8 1205 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 CKAP2Q8WWK9 683 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 TMEM121Q9BTD3 319 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 INPP5FQ9Y2H2 1132 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 KDM3BQ7LBC6 1761 aa7.47□□□□□ -1.21
USP3-210ENST00000559192 KCNN4O15554 427 aa7.46□□□□□ -1.21
USP3-210ENST00000559192 ENTPD5O75356 428 aa7.46□□□□□ -1.21
USP3-210ENST00000559192 GH1P01241 217 aa7.46□□□□□ -1.21
USP3-210ENST00000559192 RRM1P23921 792 aa7.46□□□□□ -1.21
USP3-210ENST00000559192 JAK3P52333 1124 aa7.46□□□□□ -1.21
USP3-210ENST00000559192 KPNB1Q14974 876 aaKnown RBP7.46□□□□□ -1.21
USP3-210ENST00000559192 SPDYCQ5MJ68 293 aa7.46□□□□□ -1.21
USP3-210ENST00000559192 SNX30Q5VWJ9 437 aa7.46□□□□□ -1.21
USP3-210ENST00000559192 CRELD2Q6UXH1 353 aaPredicted RBP7.46□□□□□ -1.21
USP3-210ENST00000559192 ZNF572Q7Z3I7 529 aaPredicted RBP7.46□□□□□ -1.21
USP3-210ENST00000559192 TBC1D16Q8TBP0 767 aa7.46□□□□□ -1.21
USP3-210ENST00000559192 SPATA17Q96L03 361 aa7.46□□□□□ -1.21
USP3-210ENST00000559192 COQ7Q99807 217 aa7.46□□□□□ -1.21
USP3-210ENST00000559192 KCTD10Q9H3F6 313 aa7.46□□□□□ -1.21
USP3-210ENST00000559192 TNS2Q63HR2 1409 aa7.46□□□□□ -1.21
USP3-210ENST00000559192 FAM86B1E9PN63 330 aa7.46□□□□□ -1.21
USP3-210ENST00000559192 INO80B-WBP1J3KQ70 363 aa7.46□□□□□ -1.21
USP3-210ENST00000559192 DDX3YO15523 660 aaKnown RBP7.46□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms