RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 SLC27A5Q9Y2P5 690 aa14.15□□□□□ -0.14
VPS29-211ENST00000553128 TIMM13Q9Y5L4 95 aaPredicted RBP14.15□□□□□ -0.14
VPS29-211ENST00000553128 CELSR3Q9NYQ7 3312 aa14.14□□□□□ -0.15
VPS29-211ENST00000553128 BCLAF3A2AJT9 711 aaKnown RBP14.14□□□□□ -0.15
VPS29-211ENST00000553128 TMEM8BA6NDV4 472 aa14.14□□□□□ -0.15
VPS29-211ENST00000553128 PATE3B3GLJ2 98 aa14.14□□□□□ -0.15
VPS29-211ENST00000553128 DPYSL4O14531 572 aa14.14□□□□□ -0.15
VPS29-211ENST00000553128 RNF40O75150 1001 aa14.14□□□□□ -0.15
VPS29-211ENST00000553128 CAVIN2O95810 425 aa14.14□□□□□ -0.15
VPS29-211ENST00000553128 EGFP01133 1207 aa14.14□□□□□ -0.15
VPS29-211ENST00000553128 MCM4P33991 863 aa14.14□□□□□ -0.15
VPS29-211ENST00000553128 CDR1P51861 262 aa14.14□□□□□ -0.15
VPS29-211ENST00000553128 CYP4F8P98187 520 aa14.14□□□□□ -0.15
VPS29-211ENST00000553128 GPR158Q5T848 1215 aa14.14□□□□□ -0.15
VPS29-211ENST00000553128 YTHDC1Q96MU7 727 aaKnown RBP14.14□□□□□ -0.15
VPS29-211ENST00000553128 MTMR9Q96QG7 549 aa14.14□□□□□ -0.15
VPS29-211ENST00000553128 TMEM60Q9H2L4 133 aa14.14□□□□□ -0.15
VPS29-211ENST00000553128 ATXN3LQ9H3M9 355 aa14.14□□□□□ -0.15
VPS29-211ENST00000553128 PTPRHQ9HD43 1115 aa14.14□□□□□ -0.15
VPS29-211ENST00000553128 SLC38A7Q9NVC3 462 aa14.14□□□□□ -0.15
VPS29-211ENST00000553128 MAFFQ9ULX9 164 aa14.14□□□□□ -0.15
VPS29-211ENST00000553128 TNFSF13BQ9Y275 285 aa14.14□□□□□ -0.15
VPS29-211ENST00000553128 INVSQ9Y283 1065 aa14.14□□□□□ -0.15
VPS29-211ENST00000553128 CDX4O14627 284 aaPredicted RBP14.13□□□□□ -0.15
VPS29-211ENST00000553128 KCNE1P15382 129 aa14.13□□□□□ -0.15
VPS29-211ENST00000553128 CYP11B2P19099 503 aa14.13□□□□□ -0.15
VPS29-211ENST00000553128 U2AF2P26368 475 aaKnown RBP eCLIP14.13□□□□□ -0.152e-6■■□□□ 11.9
VPS29-211ENST00000553128 PSMA5P28066 241 aa14.13□□□□□ -0.15
VPS29-211ENST00000553128 YARSP54577 528 aaKnown RBP14.13□□□□□ -0.15
VPS29-211ENST00000553128 SCRN1Q12765 414 aa14.13□□□□□ -0.15
VPS29-211ENST00000553128 ITPRIPL2Q3MIP1 535 aa14.13□□□□□ -0.15
VPS29-211ENST00000553128 DAB2IPQ5VWQ8 1189 aa14.13□□□□□ -0.15
VPS29-211ENST00000553128 TRIM68Q6AZZ1 485 aa14.13□□□□□ -0.15
VPS29-211ENST00000553128 HAUS6Q7Z4H7 955 aa14.13□□□□□ -0.15
VPS29-211ENST00000553128 BPIFB1Q8TDL5 484 aa14.13□□□□□ -0.15
VPS29-211ENST00000553128 ACO2Q99798 780 aaKnown RBP14.13□□□□□ -0.15
VPS29-211ENST00000553128 POLR3CQ9BUI4 534 aaPredicted RBP14.13□□□□□ -0.15
VPS29-211ENST00000553128 ZSWIM6Q9HCJ5 1215 aa14.13□□□□□ -0.15
VPS29-211ENST00000553128 HPS4Q9NQG7 708 aa14.13□□□□□ -0.15
VPS29-211ENST00000553128 TOPORSQ9NS56 1045 aaPredicted RBP14.13□□□□□ -0.15
VPS29-211ENST00000553128 CNTN3Q9P232 1028 aa14.13□□□□□ -0.15
VPS29-211ENST00000553128 TUBGCP4Q9UGJ1 667 aa14.13□□□□□ -0.15
VPS29-211ENST00000553128 PCDHB8Q9UN66 801 aa14.13□□□□□ -0.15
VPS29-211ENST00000553128 SETXQ7Z333 2677 aaKnown RBP14.13□□□□□ -0.15
VPS29-211ENST00000553128 ATG2BQ96BY7 2078 aa14.13□□□□□ -0.15
VPS29-211ENST00000553128 TAF4O00268 1085 aa14.12□□□□□ -0.15
VPS29-211ENST00000553128 HYAL3O43820 417 aaPredicted RBP14.12□□□□□ -0.15
VPS29-211ENST00000553128 NEMFO60524 1076 aa14.12□□□□□ -0.15
VPS29-211ENST00000553128 CEACAM1P13688 526 aa14.12□□□□□ -0.15
VPS29-211ENST00000553128 GABRR2P28476 465 aa14.12□□□□□ -0.15
VPS29-211ENST00000553128 RPL9P32969 192 aaKnown RBP14.12□□□□□ -0.15
VPS29-211ENST00000553128 EPHB3P54753 998 aa14.12□□□□□ -0.15
VPS29-211ENST00000553128 ZNF568Q3ZCX4 644 aa14.12□□□□□ -0.15
VPS29-211ENST00000553128 SEZ6Q53EL9 994 aa14.12□□□□□ -0.15
VPS29-211ENST00000553128 TAS1R3Q7RTX0 852 aa14.12□□□□□ -0.15
VPS29-211ENST00000553128 DNAJB7Q7Z6W7 309 aaPredicted RBP14.12□□□□□ -0.15
VPS29-211ENST00000553128 ATAD1Q8NBU5 361 aa14.12□□□□□ -0.15
VPS29-211ENST00000553128 DEFB124Q8NES8 71 aa14.12□□□□□ -0.15
VPS29-211ENST00000553128 APPL2Q8NEU8 664 aa14.12□□□□□ -0.15
VPS29-211ENST00000553128 CCDC94Q9BW85 323 aaPredicted RBP14.12□□□□□ -0.15
VPS29-211ENST00000553128 TUFT1Q9NNX1 390 aa14.12□□□□□ -0.15
VPS29-211ENST00000553128 GKN1Q9NS71 199 aa14.12□□□□□ -0.15
VPS29-211ENST00000553128 OBP2AQ9NY56 170 aa14.12□□□□□ -0.15
VPS29-211ENST00000553128 KLK13Q9UKR3 277 aa14.12□□□□□ -0.15
VPS29-211ENST00000553128 NUP210Q8TEM1 1887 aaPredicted RBP14.12□□□□□ -0.15
VPS29-211ENST00000553128 GCN1Q92616 2671 aaKnown RBP14.11□□□□□ -0.15
VPS29-211ENST00000553128 ARHGEF35A5YM69 484 aa14.11□□□□□ -0.15
VPS29-211ENST00000553128 ABLIM1O14639 778 aa14.11□□□□□ -0.15
VPS29-211ENST00000553128 TRDMT1O14717 391 aaKnown RBP14.11□□□□□ -0.15
VPS29-211ENST00000553128 OAZ2O95190 189 aa14.11□□□□□ -0.15
VPS29-211ENST00000553128 CTDNEP1O95476 244 aa14.11□□□□□ -0.15
VPS29-211ENST00000553128 CSRP1P21291 193 aaKnown RBP14.11□□□□□ -0.15
VPS29-211ENST00000553128 EFNA5P52803 228 aa14.11□□□□□ -0.15
VPS29-211ENST00000553128 GRSF1Q12849 480 aaKnown RBP eCLIP14.11□□□□□ -0.15
VPS29-211ENST00000553128 ELF2Q15723 593 aa14.11□□□□□ -0.15
VPS29-211ENST00000553128 CENPPQ6IPU0 288 aa14.11□□□□□ -0.15
VPS29-211ENST00000553128 CPLX2Q6PUV4 134 aaKnown RBP14.11□□□□□ -0.15
VPS29-211ENST00000553128 CAMKK1Q8N5S9 505 aa14.11□□□□□ -0.15
VPS29-211ENST00000553128 RIN3Q8TB24 985 aa14.11□□□□□ -0.15
VPS29-211ENST00000553128 EZH1Q92800 747 aaPredicted RBP14.11□□□□□ -0.15
VPS29-211ENST00000553128 PSMG2Q969U7 264 aa14.11□□□□□ -0.15
VPS29-211ENST00000553128 COL26A1Q96A83 441 aa14.11□□□□□ -0.15
VPS29-211ENST00000553128 NACC1Q96RE7 527 aa14.11□□□□□ -0.15
VPS29-211ENST00000553128 LPIN3Q9BQK8 851 aa14.11□□□□□ -0.15
VPS29-211ENST00000553128 FAM83CQ9BQN1 747 aa14.11□□□□□ -0.15
VPS29-211ENST00000553128 TARS2Q9BW92 718 aaKnown RBP14.11□□□□□ -0.15
VPS29-211ENST00000553128 EBF3Q9H4W6 596 aa14.11□□□□□ -0.15
VPS29-211ENST00000553128 TMEM9BQ9NQ34 198 aa14.11□□□□□ -0.15
VPS29-211ENST00000553128 CCL26Q9Y258 94 aa14.11□□□□□ -0.15
VPS29-211ENST00000553128 MTMR11A4FU01 709 aa14.1□□□□□ -0.15
VPS29-211ENST00000553128 K7ERI5 159 aa14.1□□□□□ -0.15
VPS29-211ENST00000553128 M0QZQ0 153 aa14.1□□□□□ -0.15
VPS29-211ENST00000553128 ATG13O75143 517 aa14.1□□□□□ -0.15
VPS29-211ENST00000553128 RHOBTB1O94844 696 aa14.1□□□□□ -0.15
VPS29-211ENST00000553128 HARSP12081 509 aaKnown RBP14.1□□□□□ -0.15
VPS29-211ENST00000553128 ARSAP15289 507 aa14.1□□□□□ -0.15
VPS29-211ENST00000553128 MARCKSP29966 332 aaPredicted RBP14.1□□□□□ -0.15
VPS29-211ENST00000553128 KRT2P35908 639 aa14.1□□□□□ -0.15
VPS29-211ENST00000553128 ALDH1A3P47895 512 aa14.1□□□□□ -0.15
VPS29-211ENST00000553128 MCM2P49736 904 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms