RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 TRIOO75962 3097 aa13.99□□□□□ -0.17
VPS28-216ENST00000533806 TNFRSF10AO00220 468 aa13.99□□□□□ -0.17
VPS28-216ENST00000533806 CYB561D2O14569 222 aa13.99□□□□□ -0.17
VPS28-216ENST00000533806 CALUO43852 315 aaPredicted RBP13.99□□□□□ -0.17
VPS28-216ENST00000533806 AKAP3O75969 853 aa13.99□□□□□ -0.17
VPS28-216ENST00000533806 VNN2O95498 520 aa13.99□□□□□ -0.17
VPS28-216ENST00000533806 CST3P01034 146 aaPredicted RBP13.99□□□□□ -0.17
VPS28-216ENST00000533806 POU2F2P09086 479 aa13.99□□□□□ -0.17
VPS28-216ENST00000533806 TMEM191BP0C7N4 346 aa13.99□□□□□ -0.17
VPS28-216ENST00000533806 ODC1P11926 461 aa13.99□□□□□ -0.17
VPS28-216ENST00000533806 HOXA9P31269 272 aa13.99□□□□□ -0.17
VPS28-216ENST00000533806 RBP5P82980 135 aa13.99□□□□□ -0.17
VPS28-216ENST00000533806 EDRF1Q3B7T1 1238 aa13.99□□□□□ -0.17
VPS28-216ENST00000533806 SV2CQ496J9 727 aa13.99□□□□□ -0.17
VPS28-216ENST00000533806 ATAT1Q5SQI0 421 aa13.99□□□□□ -0.17
VPS28-216ENST00000533806 TPGS2Q68CL5 300 aa13.99□□□□□ -0.17
VPS28-216ENST00000533806 OVOS1Q6IE37 1185 aa13.99□□□□□ -0.17
VPS28-216ENST00000533806 ZNF280DQ6N043 979 aa13.99□□□□□ -0.17
VPS28-216ENST00000533806 ZC3H3Q8IXZ2 948 aaKnown RBP13.99□□□□□ -0.17
VPS28-216ENST00000533806 TCEAL8Q8IYN2 117 aa13.99□□□□□ -0.17
VPS28-216ENST00000533806 KHSRPQ92945 711 aaKnown RBP eCLIP13.99□□□□□ -0.17
VPS28-216ENST00000533806 CCDC127Q96BQ5 260 aa13.99□□□□□ -0.17
VPS28-216ENST00000533806 ANKRD36BP1Q96IX9 119 aa13.99□□□□□ -0.17
VPS28-216ENST00000533806 RIPOR3Q96MK2 946 aa13.99□□□□□ -0.17
VPS28-216ENST00000533806 PRKD2Q9BZL6 878 aa13.99□□□□□ -0.17
VPS28-216ENST00000533806 MAN1B1Q9UKM7 699 aa13.99□□□□□ -0.17
VPS28-216ENST00000533806 MAFFQ9ULX9 164 aa13.99□□□□□ -0.17
VPS28-216ENST00000533806 TCF20Q9UGU0 1960 aaKnown RBP13.99□□□□□ -0.17
VPS28-216ENST00000533806 PLXNA3P51805 1871 aa13.99□□□□□ -0.17
VPS28-216ENST00000533806 ARHGEF37A1IGU5 675 aa13.98□□□□□ -0.17
VPS28-216ENST00000533806 OR6C75A6NL08 312 aa13.98□□□□□ -0.17
VPS28-216ENST00000533806 LRRIQ3A6PVS8 624 aaPredicted RBP13.98□□□□□ -0.17
VPS28-216ENST00000533806 SEC24AO95486 1093 aa13.98□□□□□ -0.17
VPS28-216ENST00000533806 TNNC2P02585 160 aa13.98□□□□□ -0.17
VPS28-216ENST00000533806 C8AP07357 584 aa13.98□□□□□ -0.17
VPS28-216ENST00000533806 HNRNPA1P09651 372 aaKnown RBP eCLIP13.98□□□□□ -0.17
VPS28-216ENST00000533806 DLATP10515 647 aaKnown RBP13.98□□□□□ -0.17
VPS28-216ENST00000533806 NR2F2P24468 414 aa13.98□□□□□ -0.17
VPS28-216ENST00000533806 PMS1P54277 932 aaKnown RBP13.98□□□□□ -0.17
VPS28-216ENST00000533806 DLG4P78352 724 aa13.98□□□□□ -0.17
VPS28-216ENST00000533806 ENPEPQ07075 957 aa13.98□□□□□ -0.17
VPS28-216ENST00000533806 MORC3Q14149 939 aa13.98□□□□□ -0.17
VPS28-216ENST00000533806 WSCD1Q658N2 575 aa13.98□□□□□ -0.17
VPS28-216ENST00000533806 ELMSAN1Q6PJG2 1045 aa13.98□□□□□ -0.17
VPS28-216ENST00000533806 TMC2Q8TDI7 906 aa13.98□□□□□ -0.17
VPS28-216ENST00000533806 ZNF560Q96MR9 790 aa13.98□□□□□ -0.17
VPS28-216ENST00000533806 FNBP1Q96RU3 617 aa13.98□□□□□ -0.17
VPS28-216ENST00000533806 LMBRD1Q9NUN5 540 aa13.98□□□□□ -0.17
VPS28-216ENST00000533806 AFF4Q9UHB7 1163 aaKnown RBP13.98□□□□□ -0.17
VPS28-216ENST00000533806 DSEQ9UL01 958 aa13.98□□□□□ -0.17
VPS28-216ENST00000533806 SCN1AP35498 2009 aa13.97□□□□□ -0.17
VPS28-216ENST00000533806 GABRDO14764 452 aa13.97□□□□□ -0.17
VPS28-216ENST00000533806 IKBKBO14920 756 aa13.97□□□□□ -0.17
VPS28-216ENST00000533806 STAU1O95793 577 aaKnown RBP13.97□□□□□ -0.17
VPS28-216ENST00000533806 C4BPAP04003 597 aaKnown RBP13.97□□□□□ -0.17
VPS28-216ENST00000533806 CD44P16070 742 aaKnown RBP13.97□□□□□ -0.17
VPS28-216ENST00000533806 TNNI1P19237 187 aa13.97□□□□□ -0.17
VPS28-216ENST00000533806 GPR17Q13304 367 aa13.97□□□□□ -0.17
VPS28-216ENST00000533806 SOWAHAQ2M3V2 549 aa13.97□□□□□ -0.17
VPS28-216ENST00000533806 ANKRD40Q6AI12 368 aa13.97□□□□□ -0.17
VPS28-216ENST00000533806 RNF19BQ6ZMZ0 732 aa13.97□□□□□ -0.17
VPS28-216ENST00000533806 USP37Q86T82 979 aa13.97□□□□□ -0.17
VPS28-216ENST00000533806 PDCL2Q8N4E4 241 aa13.97□□□□□ -0.17
VPS28-216ENST00000533806 OR10T2Q8NGX3 314 aa13.97□□□□□ -0.17
VPS28-216ENST00000533806 SLC7A14Q8TBB6 771 aa13.97□□□□□ -0.17
VPS28-216ENST00000533806 HPDLQ96IR7 371 aa13.97□□□□□ -0.17
VPS28-216ENST00000533806 TMEM209Q96SK2 561 aa13.97□□□□□ -0.17
VPS28-216ENST00000533806 XYLT2Q9H1B5 865 aa13.97□□□□□ -0.17
VPS28-216ENST00000533806 WDR6Q9NNW5 1121 aaKnown RBP13.97□□□□□ -0.17
VPS28-216ENST00000533806 L1RE1Q9UN81 338 aa13.97□□□□□ -0.17
VPS28-216ENST00000533806 USTQ9Y2C2 406 aa13.97□□□□□ -0.17
VPS28-216ENST00000533806 PPP1R3GB7ZBB8 358 aa13.96□□□□□ -0.17
VPS28-216ENST00000533806 N4BP1O75113 896 aaKnown RBP13.96□□□□□ -0.17
VPS28-216ENST00000533806 VNN1O95497 513 aa13.96□□□□□ -0.17
VPS28-216ENST00000533806 KRT19P08727 400 aa13.96□□□□□ -0.17
VPS28-216ENST00000533806 OR4Q2P0C623 313 aa13.96□□□□□ -0.17
VPS28-216ENST00000533806 RPL13P26373 211 aaKnown RBP13.96□□□□□ -0.17
VPS28-216ENST00000533806 AP3M2P53677 418 aa13.96□□□□□ -0.17
VPS28-216ENST00000533806 ARPP19P56211 112 aa13.96□□□□□ -0.17
VPS28-216ENST00000533806 ADAM9Q13443 819 aa13.96□□□□□ -0.17
VPS28-216ENST00000533806 LIN9Q5TKA1 542 aa13.96□□□□□ -0.17
VPS28-216ENST00000533806 TDRD10Q5VZ19 366 aaKnown RBP13.96□□□□□ -0.17
VPS28-216ENST00000533806 CEP135Q66GS9 1140 aa13.96□□□□□ -0.17
VPS28-216ENST00000533806 ISM2Q6H9L7 571 aa13.96□□□□□ -0.17
VPS28-216ENST00000533806 CCDC149Q6ZUS6 474 aa13.96□□□□□ -0.17
VPS28-216ENST00000533806 DPH6Q7L8W6 267 aa13.96□□□□□ -0.17
VPS28-216ENST00000533806 LRRTM3Q86VH5 581 aa13.96□□□□□ -0.17
VPS28-216ENST00000533806 TOP6BLQ8N6T0 577 aa13.96□□□□□ -0.17
VPS28-216ENST00000533806 SPATA18Q8TC71 538 aa13.96□□□□□ -0.17
VPS28-216ENST00000533806 SMG7Q92540 1137 aaKnown RBP13.96□□□□□ -0.17
VPS28-216ENST00000533806 RPGRIP1Q96KN7 1286 aa13.96□□□□□ -0.17
VPS28-216ENST00000533806 MKNK1Q9BUB5 465 aa13.96□□□□□ -0.17
VPS28-216ENST00000533806 ZCWPW1Q9H0M4 648 aa13.96□□□□□ -0.17
VPS28-216ENST00000533806 CRISPLD1Q9H336 500 aa13.96□□□□□ -0.17
VPS28-216ENST00000533806 VRTNQ9H8Y1 702 aa13.96□□□□□ -0.17
VPS28-216ENST00000533806 KIAA1468Q9P260 1216 aa13.96□□□□□ -0.17
VPS28-216ENST00000533806 FRMD4BQ9Y2L6 1034 aa13.96□□□□□ -0.17
VPS28-216ENST00000533806 PSMC2P35998 433 aaKnown RBP13.95□□□□□ -0.18
VPS28-216ENST00000533806 BFSP1Q12934 665 aa13.95□□□□□ -0.18
VPS28-216ENST00000533806 MYO1EQ12965 1108 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms