RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 GTSE1Q9NYZ3 720 aa9.09□□□□□ -0.95
CD44-232ENST00000531118 WRAP73Q9P2S5 460 aaPredicted RBP9.09□□□□□ -0.95
CD44-232ENST00000531118 SHROOM3Q8TF72 1996 aa9.09□□□□□ -0.95
CD44-232ENST00000531118 PCDH15Q96QU1 1955 aa9.09□□□□□ -0.95
CD44-232ENST00000531118 MYO18BQ8IUG5 2567 aa9.09□□□□□ -0.95
CD44-232ENST00000531118 URB1O60287 2271 aaKnown RBP9.08□□□□□ -0.96
CD44-232ENST00000531118 PTPRBP23467 1997 aa9.08□□□□□ -0.96
CD44-232ENST00000531118 HECTD1Q9ULT8 2610 aa9.08□□□□□ -0.96
CD44-232ENST00000531118 FAM221BA6H8Z2 402 aa9.08□□□□□ -0.96
CD44-232ENST00000531118 H0Y626 953 aa9.08□□□□□ -0.96
CD44-232ENST00000531118 I3L4J1 428 aa9.08□□□□□ -0.96
CD44-232ENST00000531118 EML1O00423 815 aa9.08□□□□□ -0.96
CD44-232ENST00000531118 RECQL4O94761 1208 aa9.08□□□□□ -0.96
CD44-232ENST00000531118 ABLIM3O94929 683 aa9.08□□□□□ -0.96
CD44-232ENST00000531118 TRIM16O95361 564 aa9.08□□□□□ -0.96
CD44-232ENST00000531118 THP07101 528 aa9.08□□□□□ -0.96
CD44-232ENST00000531118 IGFBP6P24592 240 aaPredicted RBP9.08□□□□□ -0.96
CD44-232ENST00000531118 GNA11P29992 359 aa9.08□□□□□ -0.96
CD44-232ENST00000531118 CDC27P30260 824 aa9.08□□□□□ -0.96
CD44-232ENST00000531118 QARSP47897 775 aaKnown RBP9.08□□□□□ -0.96
CD44-232ENST00000531118 SIM1P81133 766 aaPredicted RBP9.08□□□□□ -0.96
CD44-232ENST00000531118 NCBP1Q09161 790 aaKnown RBP9.08□□□□□ -0.96
CD44-232ENST00000531118 SCAPQ12770 1279 aa9.08□□□□□ -0.96
CD44-232ENST00000531118 TWF1Q12792 350 aa9.08□□□□□ -0.96
CD44-232ENST00000531118 TFDP1Q14186 410 aa9.08□□□□□ -0.96
CD44-232ENST00000531118 TTC22Q5TAA0 569 aa9.08□□□□□ -0.96
CD44-232ENST00000531118 IQCEQ6IPM2 695 aa9.08□□□□□ -0.96
CD44-232ENST00000531118 FSTL4Q6MZW2 842 aa9.08□□□□□ -0.96
CD44-232ENST00000531118 C3orf58Q8NDZ4 430 aa9.08□□□□□ -0.96
CD44-232ENST00000531118 GLIS3Q8NEA6 775 aa9.08□□□□□ -0.96
CD44-232ENST00000531118 ZNF461Q8TAF7 563 aa9.08□□□□□ -0.96
CD44-232ENST00000531118 ZFYVE19Q96K21 471 aa9.08□□□□□ -0.96
CD44-232ENST00000531118 LXNQ9BS40 222 aa9.08□□□□□ -0.96
CD44-232ENST00000531118 CEP72Q9P209 647 aa9.08□□□□□ -0.96
CD44-232ENST00000531118 BRPF3Q9ULD4 1205 aa9.08□□□□□ -0.96
CD44-232ENST00000531118 TSC2P49815 1807 aa9.08□□□□□ -0.96
CD44-232ENST00000531118 A0A1B0GUA9 196 aa9.07□□□□□ -0.96
CD44-232ENST00000531118 CCDC194A0A1B0GVG4 234 aa9.07□□□□□ -0.96
CD44-232ENST00000531118 TBX3O15119 743 aa9.07□□□□□ -0.96
CD44-232ENST00000531118 DKC1O60832 514 aaKnown RBP eCLIP9.07□□□□□ -0.96
CD44-232ENST00000531118 ATG13O75143 517 aa9.07□□□□□ -0.96
CD44-232ENST00000531118 ATF2P15336 505 aa9.07□□□□□ -0.96
CD44-232ENST00000531118 GBP1P32455 592 aa9.07□□□□□ -0.96
CD44-232ENST00000531118 BRCC3P46736 316 aa9.07□□□□□ -0.96
CD44-232ENST00000531118 TNK2Q07912 1038 aa9.07□□□□□ -0.96
CD44-232ENST00000531118 MXD4Q14582 209 aaPredicted RBP9.07□□□□□ -0.96
CD44-232ENST00000531118 ARHGAP29Q52LW3 1261 aa9.07□□□□□ -0.96
CD44-232ENST00000531118 STXBP5Q5T5C0 1151 aa9.07□□□□□ -0.96
CD44-232ENST00000531118 CD300LGQ6UXG3 332 aa9.07□□□□□ -0.96
CD44-232ENST00000531118 HAUS6Q7Z4H7 955 aa9.07□□□□□ -0.96
CD44-232ENST00000531118 PIP4P1Q86T03 277 aa9.07□□□□□ -0.96
CD44-232ENST00000531118 TMC8Q8IU68 726 aa9.07□□□□□ -0.96
CD44-232ENST00000531118 CAMKK1Q8N5S9 505 aa9.07□□□□□ -0.96
CD44-232ENST00000531118 CCDC148Q8NFR7 591 aa9.07□□□□□ -0.96
CD44-232ENST00000531118 BICD2Q8TD16 824 aa9.07□□□□□ -0.96
CD44-232ENST00000531118 TMEM209Q96SK2 561 aa9.07□□□□□ -0.96
CD44-232ENST00000531118 NFKBIZQ9BYH8 718 aa9.07□□□□□ -0.96
CD44-232ENST00000531118 GPR88Q9GZN0 384 aa9.07□□□□□ -0.96
CD44-232ENST00000531118 EVLQ9UI08 416 aaPredicted RBP9.07□□□□□ -0.96
CD44-232ENST00000531118 VAV3Q9UKW4 847 aa9.07□□□□□ -0.96
CD44-232ENST00000531118 YIPF1Q9Y548 306 aa9.07□□□□□ -0.96
CD44-232ENST00000531118 TENM4Q6N022 2769 aa9.07□□□□□ -0.96
CD44-232ENST00000531118 CEP192Q8TEP8 1941 aa9.07□□□□□ -0.96
CD44-232ENST00000531118 PTPN13Q12923 2485 aa9.07□□□□□ -0.96
CD44-232ENST00000531118 PTPRQQ9UMZ3 2332 aa9.06□□□□□ -0.96
CD44-232ENST00000531118 A0A1W2PRU2 124 aa9.06□□□□□ -0.96
CD44-232ENST00000531118 SLC27A2O14975 620 aa9.06□□□□□ -0.96
CD44-232ENST00000531118 B3GAT3O94766 335 aa9.06□□□□□ -0.96
CD44-232ENST00000531118 PRAMEF12O95522 483 aa9.06□□□□□ -0.96
CD44-232ENST00000531118 APBB3O95704 486 aa9.06□□□□□ -0.96
CD44-232ENST00000531118 YWHABP31946 246 aaKnown RBP9.06□□□□□ -0.96
CD44-232ENST00000531118 USP11P51784 963 aa9.06□□□□□ -0.96
CD44-232ENST00000531118 CLCNKBP51801 687 aa9.06□□□□□ -0.96
CD44-232ENST00000531118 ARPP19P56211 112 aa9.06□□□□□ -0.96
CD44-232ENST00000531118 POU5F1BQ06416 359 aa9.06□□□□□ -0.96
CD44-232ENST00000531118 PPP2R5CQ13362 524 aa9.06□□□□□ -0.96
CD44-232ENST00000531118 TMEM196Q5HYL7 178 aa9.06□□□□□ -0.96
CD44-232ENST00000531118 GLRA4Q5JXX5 417 aa9.06□□□□□ -0.96
CD44-232ENST00000531118 RAB44Q7Z6P3 723 aaPredicted RBP9.06□□□□□ -0.96
CD44-232ENST00000531118 CHCHD4Q8N4Q1 142 aa9.06□□□□□ -0.96
CD44-232ENST00000531118 TBCKQ8TEA7 893 aa9.06□□□□□ -0.96
CD44-232ENST00000531118 CHFRQ96EP1 664 aa9.06□□□□□ -0.96
CD44-232ENST00000531118 ZNF512Q96ME7 567 aaPredicted RBP9.06□□□□□ -0.96
CD44-232ENST00000531118 TCEANC2Q96MN5 208 aa9.06□□□□□ -0.96
CD44-232ENST00000531118 LRRC3BQ96PB8 259 aa9.06□□□□□ -0.96
CD44-232ENST00000531118 PDZD7Q9H5P4 517 aa9.06□□□□□ -0.96
CD44-232ENST00000531118 GOLGA2P5Q9HBQ8 144 aa9.06□□□□□ -0.96
CD44-232ENST00000531118 EVA1BQ9NVM1 165 aa9.06□□□□□ -0.96
CD44-232ENST00000531118 OBP2AQ9NY56 170 aa9.06□□□□□ -0.96
CD44-232ENST00000531118 NID2Q14112 1375 aa9.06□□□□□ -0.96
CD44-232ENST00000531118 CFAP46Q8IYW2 2715 aa9.06□□□□□ -0.96
CD44-232ENST00000531118 KALRNO60229 2985 aa9.06□□□□□ -0.96
CD44-232ENST00000531118 GOLGA4Q13439 2230 aaKnown RBP9.05□□□□□ -0.96
CD44-232ENST00000531118 KLF18A0A0U1RQI7 1052 aa9.05□□□□□ -0.96
CD44-232ENST00000531118 TRAPPC3O43617 180 aa9.05□□□□□ -0.96
CD44-232ENST00000531118 SLC37A4O43826 429 aa9.05□□□□□ -0.96
CD44-232ENST00000531118 C1QL1O75973 258 aa9.05□□□□□ -0.96
CD44-232ENST00000531118 F12P00748 615 aaPredicted RBP9.05□□□□□ -0.96
CD44-232ENST00000531118 EGFP01133 1207 aa9.05□□□□□ -0.96
CD44-232ENST00000531118 PRB1P04280 392 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms