RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 FAM25EA8MYX2 175 aa6.26□□□□□ -1.41
CD44-231ENST00000531110 GOLGA6L19H0YKK7 550 aa6.26□□□□□ -1.41
CD44-231ENST00000531110 ADCY6O43306 1168 aa6.26□□□□□ -1.41
CD44-231ENST00000531110 RTN2O75298 545 aa6.26□□□□□ -1.41
CD44-231ENST00000531110 MTRF1O75570 445 aaKnown RBP6.26□□□□□ -1.41
CD44-231ENST00000531110 RTN3O95197 1032 aaPredicted RBP6.26□□□□□ -1.41
CD44-231ENST00000531110 ALOX15P16050 662 aaPredicted RBP6.26□□□□□ -1.41
CD44-231ENST00000531110 ADSLP30566 484 aaPredicted RBP6.26□□□□□ -1.41
CD44-231ENST00000531110 ELF1P32519 619 aa6.26□□□□□ -1.41
CD44-231ENST00000531110 MAN2A2P49641 1150 aa6.26□□□□□ -1.41
CD44-231ENST00000531110 PSMD7P51665 324 aa6.26□□□□□ -1.41
CD44-231ENST00000531110 MNAT1P51948 309 aa6.26□□□□□ -1.41
CD44-231ENST00000531110 ZNF132P52740 706 aa6.26□□□□□ -1.41
CD44-231ENST00000531110 PTH1RQ03431 593 aa6.26□□□□□ -1.41
CD44-231ENST00000531110 DDX10Q13206 875 aaKnown RBP6.26□□□□□ -1.41
CD44-231ENST00000531110 PRPF4BQ13523 1007 aaKnown RBP6.26□□□□□ -1.41
CD44-231ENST00000531110 SEPT2Q15019 361 aa6.26□□□□□ -1.41
CD44-231ENST00000531110 NOMO1Q15155 1222 aa6.26□□□□□ -1.41
CD44-231ENST00000531110 TTF1Q15361 905 aaPredicted RBP6.26□□□□□ -1.41
CD44-231ENST00000531110 KIAA0753Q2KHM9 967 aa6.26□□□□□ -1.41
CD44-231ENST00000531110 LCA5Q86VQ0 697 aa6.26□□□□□ -1.41
CD44-231ENST00000531110 ELOA2Q8IYF1 753 aaPredicted RBP6.26□□□□□ -1.41
CD44-231ENST00000531110 PQLC1Q8N2U9 271 aa6.26□□□□□ -1.41
CD44-231ENST00000531110 CPA6Q8N4T0 437 aa6.26□□□□□ -1.41
CD44-231ENST00000531110 GBP7Q8N8V2 638 aaPredicted RBP6.26□□□□□ -1.41
CD44-231ENST00000531110 COA7Q96BR5 231 aa6.26□□□□□ -1.41
CD44-231ENST00000531110 BICD1Q96G01 975 aa6.26□□□□□ -1.41
CD44-231ENST00000531110 CCDC34Q96HJ3 373 aa6.26□□□□□ -1.41
CD44-231ENST00000531110 NAF1Q96HR8 494 aaKnown RBP6.26□□□□□ -1.41
CD44-231ENST00000531110 RSRC1Q96IZ7 334 aaKnown RBP6.26□□□□□ -1.41
CD44-231ENST00000531110 SLC2A13Q96QE2 648 aa6.26□□□□□ -1.41
CD44-231ENST00000531110 TSPY26PQ9H489 355 aa6.26□□□□□ -1.41
CD44-231ENST00000531110 RABEP2Q9H5N1 569 aa6.26□□□□□ -1.41
CD44-231ENST00000531110 EXOC1Q9NV70 894 aa6.26□□□□□ -1.41
CD44-231ENST00000531110 DNM3Q9UQ16 869 aa6.26□□□□□ -1.41
CD44-231ENST00000531110 TMEM98Q9Y2Y6 226 aa6.26□□□□□ -1.41
CD44-231ENST00000531110 IPPQ9Y573 584 aa6.26□□□□□ -1.41
CD44-231ENST00000531110 ATRNL1Q5VV63 1379 aa6.26□□□□□ -1.41
CD44-231ENST00000531110 CCNB3Q8WWL7 1395 aa6.26□□□□□ -1.41
CD44-231ENST00000531110 MAP3K5Q99683 1374 aa6.26□□□□□ -1.41
CD44-231ENST00000531110 FHAD1B1AJZ9 1412 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 GOLGA6L10A6NI86 522 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 SMTNL1A8MU46 457 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 BBOX1O75936 387 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 STC2O76061 302 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 ABLIM3O94929 683 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 TUBB4AP04350 444 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 SNRPA1P09661 255 aaKnown RBP6.25□□□□□ -1.41
CD44-231ENST00000531110 IDO1P14902 403 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 ZNF24P17028 368 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 MGAT1P26572 445 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 ATICP31939 592 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 MAN1A1P33908 653 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 SLC6A9P48067 706 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 PER3P56645 1201 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 MCL1Q07820 350 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 SLMAPQ14BN4 828 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 CNGA3Q16281 694 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 C1QL3Q5VWW1 255 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 OTUD7BQ6GQQ9 843 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 PPP4R3AQ6IN85 833 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 SYT10Q6XYQ8 523 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 SEPT14Q6ZU15 432 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 CCDC170Q8IYT3 715 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.25□□□□□ -1.41
CD44-231ENST00000531110 BICD2Q8TD16 824 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 GPT2Q8TD30 523 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 MAGEC3Q8TD91 643 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 NRG4Q8WWG1 115 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 RSPH1Q8WYR4 309 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 CCDC47Q96A33 483 aaKnown RBP6.25□□□□□ -1.41
CD44-231ENST00000531110 UHRF1Q96T88 793 aaPredicted RBP6.25□□□□□ -1.41
CD44-231ENST00000531110 LSM14BQ9BX40 385 aaKnown RBP6.25□□□□□ -1.41
CD44-231ENST00000531110 SEZ6LQ9BYH1 1024 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 TMEM140Q9NV12 185 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 IL20Q9NYY1 176 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 SPATA7Q9P0W8 599 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 ACAD8Q9UKU7 415 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 SIK3Q9Y2K2 1263 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 ATP6V0A2Q9Y487 856 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 GOLGA3Q08378 1498 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 EVC2Q86UK5 1308 aa6.25□□□□□ -1.41
CD44-231ENST00000531110 ATXN2Q99700 1313 aaKnown RBP6.25□□□□□ -1.41
CD44-231ENST00000531110 SCAF11Q99590 1463 aaKnown RBP6.24□□□□□ -1.41
CD44-231ENST00000531110 PIK3R4Q99570 1358 aa6.24□□□□□ -1.41
CD44-231ENST00000531110 KLRG2A4D1S0 409 aaPredicted RBP6.24□□□□□ -1.41
CD44-231ENST00000531110 TBKBP1A7MCY6 615 aa6.24□□□□□ -1.41
CD44-231ENST00000531110 PRR5-ARHGAP8B1AHC4 643 aa6.24□□□□□ -1.41
CD44-231ENST00000531110 PEX11BO96011 259 aa6.24□□□□□ -1.41
CD44-231ENST00000531110 RPLP2P05387 115 aaKnown RBP6.24□□□□□ -1.41
CD44-231ENST00000531110 AKAP5P24588 427 aa6.24□□□□□ -1.41
CD44-231ENST00000531110 DDIT3P35638 169 aa6.24□□□□□ -1.41
CD44-231ENST00000531110 BUD31P41223 144 aaPredicted RBP6.24□□□□□ -1.41
CD44-231ENST00000531110 CDC42EP1Q00587 391 aa6.24□□□□□ -1.41
CD44-231ENST00000531110 PIN1Q13526 163 aaPredicted RBP6.24□□□□□ -1.41
CD44-231ENST00000531110 ODF1Q14990 250 aa6.24□□□□□ -1.41
CD44-231ENST00000531110 VPS72Q15906 364 aa6.24□□□□□ -1.41
CD44-231ENST00000531110 BMT2Q1RMZ1 405 aa6.24□□□□□ -1.41
CD44-231ENST00000531110 FAM214AQ32MH5 1076 aa6.24□□□□□ -1.41
CD44-231ENST00000531110 PLEKHG6Q3KR16 790 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms