RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 NUMBLQ9Y6R0 609 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 COMMD3-BMI1R4GMX3 469 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 QSER1Q2KHR3 1735 aa10.22□□□□□ -0.77
SYNE1-230ENST00000495090 NRAPQ86VF7 1730 aa10.22□□□□□ -0.77
SYNE1-230ENST00000495090 POC1B-GALNT4F8VUJ3 575 aa10.22□□□□□ -0.77
SYNE1-230ENST00000495090 SMAPO00193 183 aa10.22□□□□□ -0.77
SYNE1-230ENST00000495090 UNGP13051 313 aaPredicted RBP10.22□□□□□ -0.77
SYNE1-230ENST00000495090 CRABP2P29373 138 aa10.22□□□□□ -0.77
SYNE1-230ENST00000495090 CDK7P50613 346 aa10.22□□□□□ -0.77
SYNE1-230ENST00000495090 ARFIP2P53365 341 aa10.22□□□□□ -0.77
SYNE1-230ENST00000495090 GEMIN4P57678 1058 aaKnown RBP10.22□□□□□ -0.77
SYNE1-230ENST00000495090 DSG1Q02413 1049 aa10.22□□□□□ -0.77
SYNE1-230ENST00000495090 DLGAP5Q15398 846 aa10.22□□□□□ -0.77
SYNE1-230ENST00000495090 DDB1Q16531 1140 aa10.22□□□□□ -0.77
SYNE1-230ENST00000495090 WDR72Q3MJ13 1102 aa10.22□□□□□ -0.77
SYNE1-230ENST00000495090 CENPUQ71F23 418 aa10.22□□□□□ -0.77
SYNE1-230ENST00000495090 ENOSF1Q7L5Y1 443 aa10.22□□□□□ -0.77
SYNE1-230ENST00000495090 NET1Q7Z628 596 aaPredicted RBP10.22□□□□□ -0.77
SYNE1-230ENST00000495090 FBXO11Q86XK2 927 aa10.22□□□□□ -0.77
SYNE1-230ENST00000495090 ZNF677Q86XU0 584 aa10.22□□□□□ -0.77
SYNE1-230ENST00000495090 MCOLN2Q8IZK6 566 aa10.22□□□□□ -0.77
SYNE1-230ENST00000495090 PPM1KQ8N3J5 372 aa10.22□□□□□ -0.77
SYNE1-230ENST00000495090 RFWD2Q8NHY2 731 aa10.22□□□□□ -0.77
SYNE1-230ENST00000495090 HELQQ8TDG4 1101 aa10.22□□□□□ -0.77
SYNE1-230ENST00000495090 OPTNQ96CV9 577 aa10.22□□□□□ -0.77
SYNE1-230ENST00000495090 ACCSQ96QU6 501 aa10.22□□□□□ -0.77
SYNE1-230ENST00000495090 MAK16Q9BXY0 300 aaKnown RBP10.22□□□□□ -0.77
SYNE1-230ENST00000495090 PPP1R12CQ9BZL4 782 aa10.22□□□□□ -0.77
SYNE1-230ENST00000495090 MIS12Q9H081 205 aa10.22□□□□□ -0.77
SYNE1-230ENST00000495090 ST6GALNAC4Q9H4F1 302 aa10.22□□□□□ -0.77
SYNE1-230ENST00000495090 ZWILCHQ9H900 591 aa10.22□□□□□ -0.77
SYNE1-230ENST00000495090 IRAK4Q9NWZ3 460 aa10.22□□□□□ -0.77
SYNE1-230ENST00000495090 HEY2Q9UBP5 337 aa10.22□□□□□ -0.77
SYNE1-230ENST00000495090 TMCO1Q9UM00 188 aa10.22□□□□□ -0.77
SYNE1-230ENST00000495090 FAM170AA1A519 330 aa10.21□□□□□ -0.77
SYNE1-230ENST00000495090 CFAP69A5D8W1 941 aa10.21□□□□□ -0.77
SYNE1-230ENST00000495090 C6orf229H3BNL8 230 aa10.21□□□□□ -0.77
SYNE1-230ENST00000495090 LIASO43766 372 aa10.21□□□□□ -0.77
SYNE1-230ENST00000495090 CREB3O43889 395 aa10.21□□□□□ -0.77
SYNE1-230ENST00000495090 ATP5BP06576 529 aaKnown RBP10.21□□□□□ -0.77
SYNE1-230ENST00000495090 ESRRAP11474 423 aaPredicted RBP10.21□□□□□ -0.77
SYNE1-230ENST00000495090 TSHRP16473 764 aa10.21□□□□□ -0.77
SYNE1-230ENST00000495090 KRT4P19013 534 aa10.21□□□□□ -0.77
SYNE1-230ENST00000495090 ZNF76P36508 570 aa10.21□□□□□ -0.77
SYNE1-230ENST00000495090 ENPEPQ07075 957 aa10.21□□□□□ -0.77
SYNE1-230ENST00000495090 TRMT5Q32P41 509 aaKnown RBP10.21□□□□□ -0.77
SYNE1-230ENST00000495090 CNPY1Q3B7I2 92 aa10.21□□□□□ -0.77
SYNE1-230ENST00000495090 PABPC1LQ4VXU2 614 aaKnown RBP10.21□□□□□ -0.77
SYNE1-230ENST00000495090 EAPPQ56P03 285 aaPredicted RBP10.21□□□□□ -0.77
SYNE1-230ENST00000495090 RC3H1Q5TC82 1133 aaKnown RBP10.21□□□□□ -0.77
SYNE1-230ENST00000495090 ADGRD1Q6QNK2 874 aa10.21□□□□□ -0.77
SYNE1-230ENST00000495090 ADGRG6Q86SQ4 1221 aa10.21□□□□□ -0.77
SYNE1-230ENST00000495090 CCNJLQ8IV13 435 aa10.21□□□□□ -0.77
SYNE1-230ENST00000495090 KBTBD2Q8IY47 623 aa10.21□□□□□ -0.77
SYNE1-230ENST00000495090 PDCD7Q8N8D1 485 aaKnown RBP10.21□□□□□ -0.77
SYNE1-230ENST00000495090 RDH13Q8NBN7 331 aa10.21□□□□□ -0.77
SYNE1-230ENST00000495090 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.21□□□□□ -0.77
SYNE1-230ENST00000495090 WDR60Q8WVS4 1066 aa10.21□□□□□ -0.77
SYNE1-230ENST00000495090 WDR11Q9BZH6 1224 aa10.21□□□□□ -0.77
SYNE1-230ENST00000495090 MANSC1Q9H8J5 431 aa10.21□□□□□ -0.77
SYNE1-230ENST00000495090 GPAMQ9HCL2 828 aa10.21□□□□□ -0.77
SYNE1-230ENST00000495090 HSPBP1Q9NZL4 362 aa10.21□□□□□ -0.77
SYNE1-230ENST00000495090 ATXN10Q9UBB4 475 aa10.21□□□□□ -0.77
SYNE1-230ENST00000495090 PHF24Q9UPV7 400 aa10.21□□□□□ -0.77
SYNE1-230ENST00000495090 DRG1Q9Y295 367 aaKnown RBP10.21□□□□□ -0.77
SYNE1-230ENST00000495090 ZNFX1Q9P2E3 1918 aaKnown RBP10.21□□□□□ -0.77
SYNE1-230ENST00000495090 A0A1W2PPM1 405 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 K7ENM7 598 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 KLF11O14901 512 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 DHRS4L1P0CG22 281 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 ADRA1DP25100 572 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 GTF2H1P32780 548 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 PHBP35232 272 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 RPL26P61254 145 aaKnown RBP10.21□□□□□ -0.78
SYNE1-230ENST00000495090 CDK18Q07002 472 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 LSAMPQ13449 338 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 HNRNPDQ14103 355 aaKnown RBP10.21□□□□□ -0.78
SYNE1-230ENST00000495090 NFIXQ14938 502 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 SEPT7Q16181 437 aaKnown RBP10.21□□□□□ -0.78
SYNE1-230ENST00000495090 KLHL38Q2WGJ6 581 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 LIN52Q52LA3 116 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 SLFN13Q68D06 897 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 KRT39Q6A163 491 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 RINLQ6ZS11 566 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 GSTA5Q7RTV2 222 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 TMPRSS6Q8IU80 811 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 SCYL3Q8IZE3 742 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 DAW1Q8N136 415 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 ALLCQ8N6M5 410 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 BANPQ8N9N5 519 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.21□□□□□ -0.78
SYNE1-230ENST00000495090 CCDC110Q8TBZ0 833 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 PLEKHO2Q8TD55 490 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 MZB1Q8WU39 189 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 PPP2R3CQ969Q6 453 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 NT5C1BQ96P26 610 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 NDNQ99608 321 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 TSSK1BQ9BXA7 367 aa10.21□□□□□ -0.78
SYNE1-230ENST00000495090 RANBP17Q9H2T7 1088 aaKnown RBP10.21□□□□□ -0.78
SYNE1-230ENST00000495090 VPS37BQ9H9H4 285 aa10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms