RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 H7C4K7 107 aa21.5■■□□□ 1.03
COL9A3-202ENST00000452372 ADAM12O43184 909 aa21.5■■□□□ 1.03
COL9A3-202ENST00000452372 TGM5O43548 720 aa21.5■■□□□ 1.03
COL9A3-202ENST00000452372 TBC1D4O60343 1298 aa21.5■■□□□ 1.03
COL9A3-202ENST00000452372 TYMPP19971 482 aa21.5■■□□□ 1.03
COL9A3-202ENST00000452372 BMP6P22004 513 aa21.5■■□□□ 1.03
COL9A3-202ENST00000452372 SP100P23497 879 aaPredicted RBP21.5■■□□□ 1.03
COL9A3-202ENST00000452372 OR1D2P34982 312 aa21.5■■□□□ 1.03
COL9A3-202ENST00000452372 PPP1R2P41236 205 aa21.5■■□□□ 1.03
COL9A3-202ENST00000452372 PNPLA4P41247 253 aa21.5■■□□□ 1.03
COL9A3-202ENST00000452372 RBP5P82980 135 aa21.5■■□□□ 1.03
COL9A3-202ENST00000452372 STIM1Q13586 685 aa21.5■■□□□ 1.03
COL9A3-202ENST00000452372 RAB33AQ14088 237 aa21.5■■□□□ 1.03
COL9A3-202ENST00000452372 RARS2Q5T160 578 aaKnown RBP21.5■■□□□ 1.03
COL9A3-202ENST00000452372 CEP135Q66GS9 1140 aa21.5■■□□□ 1.03
COL9A3-202ENST00000452372 RSPO2Q6UXX9 243 aaPredicted RBP21.5■■□□□ 1.03
COL9A3-202ENST00000452372 GLYCTKQ8IVS8 523 aa21.5■■□□□ 1.03
COL9A3-202ENST00000452372 LRRC52Q8N7C0 313 aa21.5■■□□□ 1.03
COL9A3-202ENST00000452372 PLEKHO2Q8TD55 490 aa21.5■■□□□ 1.03
COL9A3-202ENST00000452372 PARD3BQ8TEW8 1205 aa21.5■■□□□ 1.03
COL9A3-202ENST00000452372 HDAC7Q8WUI4 952 aa21.5■■□□□ 1.03
COL9A3-202ENST00000452372 PBXIP1Q96AQ6 731 aa21.5■■□□□ 1.03
COL9A3-202ENST00000452372 DHTKD1Q96HY7 919 aaPredicted RBP21.5■■□□□ 1.03
COL9A3-202ENST00000452372 ZNF560Q96MR9 790 aa21.5■■□□□ 1.03
COL9A3-202ENST00000452372 KCNH6Q9H252 994 aa21.5■■□□□ 1.03
COL9A3-202ENST00000452372 CLSTN2Q9H4D0 955 aa21.5■■□□□ 1.03
COL9A3-202ENST00000452372 DPP7Q9UHL4 492 aa21.5■■□□□ 1.03
COL9A3-202ENST00000452372 SIX4Q9UIU6 781 aa21.5■■□□□ 1.03
COL9A3-202ENST00000452372 ARHGEF37A1IGU5 675 aa21.49■■□□□ 1.03
COL9A3-202ENST00000452372 KPNA7A9QM74 516 aa21.49■■□□□ 1.03
COL9A3-202ENST00000452372 BIN1O00499 593 aa21.49■■□□□ 1.03
COL9A3-202ENST00000452372 OAZ2O95190 189 aa21.49■■□□□ 1.03
COL9A3-202ENST00000452372 CLDN10P78369 228 aa21.49■■□□□ 1.03
COL9A3-202ENST00000452372 PTPN21Q16825 1174 aa21.49■■□□□ 1.03
COL9A3-202ENST00000452372 SV2CQ496J9 727 aa21.49■■□□□ 1.03
COL9A3-202ENST00000452372 IER5LQ5T953 404 aa21.49■■□□□ 1.03
COL9A3-202ENST00000452372 SCARA3Q6AZY7 606 aa21.49■■□□□ 1.03
COL9A3-202ENST00000452372 SLC8B1Q6J4K2 584 aa21.49■■□□□ 1.03
COL9A3-202ENST00000452372 CES5AQ6NT32 575 aa21.49■■□□□ 1.03
COL9A3-202ENST00000452372 TRAPPC11Q7Z392 1133 aa21.49■■□□□ 1.03
COL9A3-202ENST00000452372 TRIML1Q8N9V2 468 aa21.49■■□□□ 1.03
COL9A3-202ENST00000452372 ZNF516Q92618 1163 aa21.49■■□□□ 1.03
COL9A3-202ENST00000452372 TSG101Q99816 390 aa21.49■■□□□ 1.03
COL9A3-202ENST00000452372 TIMM13Q9Y5L4 95 aaPredicted RBP21.49■■□□□ 1.03
COL9A3-202ENST00000452372 CDY1Q9Y6F8 540 aa21.49■■□□□ 1.03
COL9A3-202ENST00000452372 CACNA1HO95180 2353 aa21.49■■□□□ 1.03
COL9A3-202ENST00000452372 C2CD4DB7Z1M9 353 aa21.48■■□□□ 1.03
COL9A3-202ENST00000452372 PPP1R3GB7ZBB8 358 aa21.48■■□□□ 1.03
COL9A3-202ENST00000452372 PSMA7O14818 248 aa21.48■■□□□ 1.03
COL9A3-202ENST00000452372 AKAP3O75969 853 aa21.48■■□□□ 1.03
COL9A3-202ENST00000452372 KRT19P08727 400 aa21.48■■□□□ 1.03
COL9A3-202ENST00000452372 ODC1P11926 461 aa21.48■■□□□ 1.03
COL9A3-202ENST00000452372 CD44P16070 742 aaKnown RBP21.48■■□□□ 1.03
COL9A3-202ENST00000452372 PSMC2P35998 433 aaKnown RBP21.48■■□□□ 1.03
COL9A3-202ENST00000452372 AP3M2P53677 418 aa21.48■■□□□ 1.03
COL9A3-202ENST00000452372 YWHAHQ04917 246 aaPredicted RBP21.48■■□□□ 1.03
COL9A3-202ENST00000452372 LRRC63Q05C16 580 aa21.48■■□□□ 1.03
COL9A3-202ENST00000452372 SIGLEC14Q08ET2 396 aa21.48■■□□□ 1.03
COL9A3-202ENST00000452372 ELMSAN1Q6PJG2 1045 aa21.48■■□□□ 1.03
COL9A3-202ENST00000452372 USP37Q86T82 979 aa21.48■■□□□ 1.03
COL9A3-202ENST00000452372 TMC2Q8TDI7 906 aa21.48■■□□□ 1.03
COL9A3-202ENST00000452372 NECTIN4Q96NY8 510 aa21.48■■□□□ 1.03
COL9A3-202ENST00000452372 PLEKHA4Q9H4M7 779 aa21.48■■□□□ 1.03
COL9A3-202ENST00000452372 FBXL5Q9UKA1 691 aa21.48■■□□□ 1.03
COL9A3-202ENST00000452372 R3HCC1Q9Y3T6 440 aaKnown RBP21.48■■□□□ 1.03
COL9A3-202ENST00000452372 LRRIQ3A6PVS8 624 aaPredicted RBP21.47■■□□□ 1.03
COL9A3-202ENST00000452372 CYB561D2O14569 222 aa21.47■■□□□ 1.03
COL9A3-202ENST00000452372 CYP11A1P05108 521 aa21.47■■□□□ 1.03
COL9A3-202ENST00000452372 SPATA31D3P0C874 917 aa21.47■■□□□ 1.03
COL9A3-202ENST00000452372 CCNE1P24864 410 aa21.47■■□□□ 1.03
COL9A3-202ENST00000452372 MTHFRP42898 656 aa21.47■■□□□ 1.03
COL9A3-202ENST00000452372 PMS1P54277 932 aaKnown RBP21.47■■□□□ 1.03
COL9A3-202ENST00000452372 NHLH1Q02575 133 aa21.47■■□□□ 1.03
COL9A3-202ENST00000452372 CTXN3Q4LDR2 81 aa21.47■■□□□ 1.03
COL9A3-202ENST00000452372 ANKRD40Q6AI12 368 aa21.47■■□□□ 1.03
COL9A3-202ENST00000452372 ZNF280DQ6N043 979 aa21.47■■□□□ 1.03
COL9A3-202ENST00000452372 SPATA31D4Q6ZUB0 917 aa21.47■■□□□ 1.03
COL9A3-202ENST00000452372 KREMEN2Q8NCW0 462 aa21.47■■□□□ 1.03
COL9A3-202ENST00000452372 OXCT2Q9BYC2 517 aaPredicted RBP21.47■■□□□ 1.03
COL9A3-202ENST00000452372 MAN1C1Q9NR34 630 aa21.47■■□□□ 1.03
COL9A3-202ENST00000452372 DSEQ9UL01 958 aa21.47■■□□□ 1.03
COL9A3-202ENST00000452372 C2orf16Q68DN1 1984 aa21.47■■□□□ 1.03
COL9A3-202ENST00000452372 IKBKBO14920 756 aa21.46■■□□□ 1.03
COL9A3-202ENST00000452372 CETN3O15182 167 aa21.46■■□□□ 1.03
COL9A3-202ENST00000452372 CST3P01034 146 aaPredicted RBP21.46■■□□□ 1.03
COL9A3-202ENST00000452372 MCCD1P59942 119 aaPredicted RBP21.46■■□□□ 1.03
COL9A3-202ENST00000452372 FKBP3Q00688 224 aaKnown RBP21.46■■□□□ 1.03
COL9A3-202ENST00000452372 ENPEPQ07075 957 aa21.46■■□□□ 1.03
COL9A3-202ENST00000452372 MYO1EQ12965 1108 aa21.46■■□□□ 1.03
COL9A3-202ENST00000452372 OVOS1Q6IE37 1185 aa21.46■■□□□ 1.03
COL9A3-202ENST00000452372 TMC5Q6UXY8 1006 aa21.46■■□□□ 1.03
COL9A3-202ENST00000452372 INTS8Q75QN2 995 aaKnown RBP21.46■■□□□ 1.03
COL9A3-202ENST00000452372 ZC3H3Q8IXZ2 948 aaKnown RBP21.46■■□□□ 1.03
COL9A3-202ENST00000452372 FAM186BQ8IYM0 893 aa21.46■■□□□ 1.03
COL9A3-202ENST00000452372 MKNK1Q9BUB5 465 aa21.46■■□□□ 1.03
COL9A3-202ENST00000452372 NUP62CLQ9H1M0 184 aa21.46■■□□□ 1.03
COL9A3-202ENST00000452372 SFXN1Q9H9B4 322 aa21.46■■□□□ 1.03
COL9A3-202ENST00000452372 GDAP2Q9NXN4 497 aa21.46■■□□□ 1.03
COL9A3-202ENST00000452372 FBXW11Q9UKB1 542 aa21.46■■□□□ 1.03
COL9A3-202ENST00000452372 NR2E1Q9Y466 385 aa21.46■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms