RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 LPAR3Q9UBY5 353 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 FEZ2Q9UHY8 353 aaPredicted RBP5.71□□□□□ -1.5
VPS13A-207ENST00000419472 VPS28Q9UK41 221 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 PPLO60437 1756 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 NEXMIFQ5QGS0 1516 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 CLTBP09497 229 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 GABRB3P28472 473 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 SOX8P57073 446 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 ADCK5Q3MIX3 580 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 NUGGCQ68CJ6 796 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 RRAGAQ7L523 313 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 ARRDC4Q8NCT1 418 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 FLCNQ8NFG4 579 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 FBXO18Q8NFZ0 1043 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 UBE2FQ969M7 185 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 TREX2Q9BQ50 279 aaPredicted RBP5.71□□□□□ -1.5
VPS13A-207ENST00000419472 NOL10Q9BSC4 688 aaKnown RBP5.71□□□□□ -1.5
VPS13A-207ENST00000419472 COL25A1Q9BXS0 654 aaPredicted RBP5.71□□□□□ -1.5
VPS13A-207ENST00000419472 CCDC68Q9H2F9 335 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 TAF1DQ9H5J8 278 aaPredicted RBP5.71□□□□□ -1.5
VPS13A-207ENST00000419472 SAYSD1Q9NPB0 183 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 ADD3Q9UEY8 706 aaKnown RBP5.71□□□□□ -1.5
VPS13A-207ENST00000419472 PCDHGB4Q9UN71 923 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 ASB1Q9Y576 335 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 LRRC7Q96NW7 1537 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 XIRP1Q702N8 1843 aaKnown RBP5.7□□□□□ -1.5
VPS13A-207ENST00000419472 LAMC1P11047 1609 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 TRIM43BA6NCK2 446 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 PABPN1LA6NDY0 278 aaKnown RBP5.7□□□□□ -1.5
VPS13A-207ENST00000419472 VGLL3A8MV65 326 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 BTN3A1O00481 513 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 HNRNPDLO14979 420 aaKnown RBP5.7□□□□□ -1.5
VPS13A-207ENST00000419472 ITGA5P08648 1049 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 HOXB4P17483 251 aaPredicted RBP5.7□□□□□ -1.5
VPS13A-207ENST00000419472 GAB4Q2WGN9 574 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 CATSPERGQ6ZRH7 1159 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 TNPO1Q92973 898 aaKnown RBP5.7□□□□□ -1.5
VPS13A-207ENST00000419472 TRIM43Q96BQ3 446 aaPredicted RBP5.7□□□□□ -1.5
VPS13A-207ENST00000419472 PDCD2LQ9BRP1 358 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 DESI2Q9BSY9 194 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 GPR63Q9BZJ6 419 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 SIL1Q9H173 461 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 PABPC3Q9H361 631 aaKnown RBP5.7□□□□□ -1.5
VPS13A-207ENST00000419472 LDAHQ9H6V9 325 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 MAGEL2Q9UJ55 1249 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 SNX5Q9Y5X3 404 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 HS3ST4Q9Y661 456 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 XRN1Q8IZH2 1706 aaKnown RBP5.7□□□□□ -1.5
VPS13A-207ENST00000419472 SMTNL1A8MU46 457 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 NT5C1B-RDH14C9J2C7 533 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 HGSO14964 777 aaPredicted RBP5.7□□□□□ -1.5
VPS13A-207ENST00000419472 AKR1B10O60218 316 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 MSL3P1P0C860 447 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 BMP3P12645 472 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 CLK1P49759 484 aaKnown RBP5.7□□□□□ -1.5
VPS13A-207ENST00000419472 CCT4P50991 539 aaKnown RBP5.7□□□□□ -1.5
VPS13A-207ENST00000419472 ROM1Q03395 351 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 MGAT5Q09328 741 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 BECN1Q14457 450 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 NKPD1Q17RQ9 610 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 SLC10A5Q5PT55 438 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 GALNT13Q8IUC8 556 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 CDYL2Q8N8U2 506 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 CCDC191Q8NCU4 936 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 IFI44Q8TCB0 444 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 C7orf26Q96N11 449 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 MRPL46Q9H2W6 279 aaKnown RBP5.7□□□□□ -1.5
VPS13A-207ENST00000419472 NRXN3Q9Y4C0 1643 aa5.7□□□□□ -1.5
VPS13A-207ENST00000419472 FAM95CA0A1B0GW59 222 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 MASP2O00187 686 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 THAP12O43422 761 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 STARD3NLO95772 234 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 MPIG6BO95866 241 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 CST5P28325 142 aaPredicted RBP5.69□□□□□ -1.5
VPS13A-207ENST00000419472 PAPOLAP51003 745 aaKnown RBP5.69□□□□□ -1.5
VPS13A-207ENST00000419472 IRX3P78415 501 aaPredicted RBP5.69□□□□□ -1.5
VPS13A-207ENST00000419472 TLE1Q04724 770 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 CTBP1Q13363 440 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 GRIK4Q16099 956 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 EMC4Q5J8M3 183 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 TAF3Q5VWG9 929 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 ACAD10Q6JQN1 1059 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 MTERF4Q7Z6M4 381 aaKnown RBP5.69□□□□□ -1.5
VPS13A-207ENST00000419472 DCBLD1Q8N8Z6 715 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 FAM181AQ8N9Y4 354 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 FCRL2Q96LA5 508 aaPredicted RBP5.69□□□□□ -1.5
VPS13A-207ENST00000419472 HSPA12BQ96MM6 686 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 MPHOSPH8Q99549 860 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 PRPF18Q99633 342 aaKnown RBP5.69□□□□□ -1.5
VPS13A-207ENST00000419472 OSBPL6Q9BZF3 934 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 RGL1Q9NZL6 768 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 EBF1Q9UH73 591 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 ZNF335Q9H4Z2 1342 aaPredicted RBP5.69□□□□□ -1.5
VPS13A-207ENST00000419472 SGTAO43765 313 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 DKC1O60832 514 aaKnown RBP eCLIP5.69□□□□□ -1.5
VPS13A-207ENST00000419472 FRAT2O75474 233 aaPredicted RBP5.69□□□□□ -1.5
VPS13A-207ENST00000419472 RPLP2P05387 115 aaKnown RBP5.69□□□□□ -1.5
VPS13A-207ENST00000419472 MYCLP12524 364 aaPredicted RBP5.69□□□□□ -1.5
VPS13A-207ENST00000419472 MAP4P27816 1152 aaKnown RBP5.69□□□□□ -1.5
VPS13A-207ENST00000419472 ABCD3P28288 659 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms