RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 SMYD3Q9H7B4 428 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 ADAM28Q9UKQ2 775 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 PCDHB4Q9Y5E5 795 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 ARHGEF37A1IGU5 675 aa19.34■□□□□ 0.69
SDC1-203ENST00000403076 CARNS1A5YM72 827 aa19.34■□□□□ 0.69
SDC1-203ENST00000403076 LRRC53A6NM62 1247 aa19.34■□□□□ 0.69
SDC1-203ENST00000403076 GRXCR1A8MXD5 290 aa19.34■□□□□ 0.69
SDC1-203ENST00000403076 TMEM189-UBE2V1I3L0A0 370 aa19.34■□□□□ 0.69
SDC1-203ENST00000403076 I3L4J1 428 aa19.34■□□□□ 0.69
SDC1-203ENST00000403076 MFAP3LO75121 409 aa19.34■□□□□ 0.69
SDC1-203ENST00000403076 ITGB1P05556 798 aa19.34■□□□□ 0.69
SDC1-203ENST00000403076 KRT5P13647 590 aa19.34■□□□□ 0.69
SDC1-203ENST00000403076 RABGGTBP53611 331 aa19.34■□□□□ 0.69
SDC1-203ENST00000403076 CDH8P55286 799 aa19.34■□□□□ 0.69
SDC1-203ENST00000403076 GSDMDP57764 484 aa19.34■□□□□ 0.69
SDC1-203ENST00000403076 BAP1Q92560 729 aa19.34■□□□□ 0.69
SDC1-203ENST00000403076 NUCKS1Q9H1E3 243 aaKnown RBP19.34■□□□□ 0.69
SDC1-203ENST00000403076 PTPRSQ13332 1948 aa19.34■□□□□ 0.69
SDC1-203ENST00000403076 FOXN3O00409 490 aaPredicted RBP19.33■□□□□ 0.68
SDC1-203ENST00000403076 ODC1P11926 461 aa19.33■□□□□ 0.68
SDC1-203ENST00000403076 SOWAHAQ2M3V2 549 aa19.33■□□□□ 0.68
SDC1-203ENST00000403076 SFMBT2Q5VUG0 894 aa19.33■□□□□ 0.68
SDC1-203ENST00000403076 CD300LGQ6UXG3 332 aa19.33■□□□□ 0.68
SDC1-203ENST00000403076 TOP6BLQ8N6T0 577 aa19.33■□□□□ 0.68
SDC1-203ENST00000403076 COLGALT1Q8NBJ5 622 aa19.33■□□□□ 0.68
SDC1-203ENST00000403076 OR8K1Q8NGG5 319 aa19.33■□□□□ 0.68
SDC1-203ENST00000403076 SHC3Q92529 594 aa19.33■□□□□ 0.68
SDC1-203ENST00000403076 JAKMIP2Q96AA8 810 aa19.33■□□□□ 0.68
SDC1-203ENST00000403076 SUSD3Q96L08 255 aa19.33■□□□□ 0.68
SDC1-203ENST00000403076 SDCBP2Q9H190 292 aa19.33■□□□□ 0.68
SDC1-203ENST00000403076 CISHQ9NSE2 258 aa19.33■□□□□ 0.68
SDC1-203ENST00000403076 ZNHIT6Q9NWK9 470 aaKnown RBP19.33■□□□□ 0.68
SDC1-203ENST00000403076 MYO6Q9UM54 1294 aa19.33■□□□□ 0.68
SDC1-203ENST00000403076 L1RE1Q9UN81 338 aa19.33■□□□□ 0.68
SDC1-203ENST00000403076 PCDHB12Q9Y5F1 795 aa19.33■□□□□ 0.68
SDC1-203ENST00000403076 F8VZ95 297 aa19.32■□□□□ 0.68
SDC1-203ENST00000403076 PNMA6AP0CW24 399 aaPredicted RBP19.32■□□□□ 0.68
SDC1-203ENST00000403076 SOX5P35711 763 aa19.32■□□□□ 0.68
SDC1-203ENST00000403076 AARSP49588 968 aaKnown RBP eCLIP19.32■□□□□ 0.68
SDC1-203ENST00000403076 JAM2P57087 298 aa19.32■□□□□ 0.68
SDC1-203ENST00000403076 ARID5AQ03989 594 aa19.32■□□□□ 0.68
SDC1-203ENST00000403076 DPH6Q7L8W6 267 aa19.32■□□□□ 0.68
SDC1-203ENST00000403076 METTL23Q86XA0 190 aa19.32■□□□□ 0.68
SDC1-203ENST00000403076 GPIHBP1Q8IV16 184 aa19.32■□□□□ 0.68
SDC1-203ENST00000403076 TTC39CQ8N584 583 aa19.32■□□□□ 0.68
SDC1-203ENST00000403076 MRPL45Q9BRJ2 306 aaKnown RBP19.32■□□□□ 0.68
SDC1-203ENST00000403076 SNX25Q9H3E2 840 aa19.32■□□□□ 0.68
SDC1-203ENST00000403076 MARCH5Q9NX47 278 aa19.32■□□□□ 0.68
SDC1-203ENST00000403076 TIMM13Q9Y5L4 95 aaPredicted RBP19.32■□□□□ 0.68
SDC1-203ENST00000403076 COL4A6Q14031 1691 aa19.32■□□□□ 0.68
SDC1-203ENST00000403076 GFPT2O94808 682 aa19.31■□□□□ 0.68
SDC1-203ENST00000403076 MLLT1Q03111 559 aaPredicted RBP19.31■□□□□ 0.68
SDC1-203ENST00000403076 ELAVL2Q12926 359 aaKnown RBP19.31■□□□□ 0.68
SDC1-203ENST00000403076 WSCD1Q658N2 575 aa19.31■□□□□ 0.68
SDC1-203ENST00000403076 FAM109BQ6ICB4 259 aaPredicted RBP19.31■□□□□ 0.68
SDC1-203ENST00000403076 FUT10Q6P4F1 479 aa19.31■□□□□ 0.68
SDC1-203ENST00000403076 TMEM270Q6UE05 265 aa19.31■□□□□ 0.68
SDC1-203ENST00000403076 FMNL3Q8IVF7 1028 aa19.31■□□□□ 0.68
SDC1-203ENST00000403076 ADGRF2Q8IZF7 708 aa19.31■□□□□ 0.68
SDC1-203ENST00000403076 TC2NQ8N9U0 490 aa19.31■□□□□ 0.68
SDC1-203ENST00000403076 OR6B3Q8NGW1 331 aa19.31■□□□□ 0.68
SDC1-203ENST00000403076 SP7Q8TDD2 431 aaPredicted RBP19.31■□□□□ 0.68
SDC1-203ENST00000403076 TMEM169Q96HH4 297 aa19.31■□□□□ 0.68
SDC1-203ENST00000403076 IGSF21Q96ID5 467 aa19.31■□□□□ 0.68
SDC1-203ENST00000403076 PPP1R9BQ96SB3 815 aa19.31■□□□□ 0.68
SDC1-203ENST00000403076 SPG21Q9NZD8 308 aa19.31■□□□□ 0.68
SDC1-203ENST00000403076 SF3B1O75533 1304 aaKnown RBP eCLIP19.31■□□□□ 0.68
SDC1-203ENST00000403076 LCHNA4D1U4 455 aa19.3■□□□□ 0.68
SDC1-203ENST00000403076 TACC1O75410 805 aa19.3■□□□□ 0.68
SDC1-203ENST00000403076 CCDC172P0C7W6 258 aa19.3■□□□□ 0.68
SDC1-203ENST00000403076 FERP16591 822 aa19.3■□□□□ 0.68
SDC1-203ENST00000403076 ACO1P21399 889 aaKnown RBP19.3■□□□□ 0.68
SDC1-203ENST00000403076 BMP8BP34820 402 aa19.3■□□□□ 0.68
SDC1-203ENST00000403076 ASIC2Q16515 512 aa19.3■□□□□ 0.68
SDC1-203ENST00000403076 CEP57Q86XR8 500 aa19.3■□□□□ 0.68
SDC1-203ENST00000403076 TMEM86AQ8N2M4 240 aa19.3■□□□□ 0.68
SDC1-203ENST00000403076 PDCL2Q8N4E4 241 aa19.3■□□□□ 0.68
SDC1-203ENST00000403076 ABHD10Q9NUJ1 306 aa19.3■□□□□ 0.68
SDC1-203ENST00000403076 DSEQ9UL01 958 aa19.3■□□□□ 0.68
SDC1-203ENST00000403076 BARX2Q9UMQ3 279 aaPredicted RBP19.3■□□□□ 0.68
SDC1-203ENST00000403076 PCDHB8Q9UN66 801 aa19.3■□□□□ 0.68
SDC1-203ENST00000403076 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.3■□□□□ 0.68
SDC1-203ENST00000403076 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.3■□□□□ 0.68
SDC1-203ENST00000403076 M0QZQ0 153 aa19.3■□□□□ 0.68
SDC1-203ENST00000403076 FAM163BP0C2L3 166 aa19.3■□□□□ 0.68
SDC1-203ENST00000403076 MYOGP15173 224 aa19.3■□□□□ 0.68
SDC1-203ENST00000403076 PPM1AP35813 382 aa19.3■□□□□ 0.68
SDC1-203ENST00000403076 GNL1P36915 607 aaPredicted RBP19.3■□□□□ 0.68
SDC1-203ENST00000403076 ARID5BQ14865 1188 aa19.3■□□□□ 0.68
SDC1-203ENST00000403076 ZNF394Q53GI3 561 aa19.3■□□□□ 0.68
SDC1-203ENST00000403076 FAM171A1Q5VUB5 890 aa19.3■□□□□ 0.68
SDC1-203ENST00000403076 TMEM173Q86WV6 379 aaPredicted RBP19.3■□□□□ 0.68
SDC1-203ENST00000403076 FAM71AQ8IYT1 594 aa19.3■□□□□ 0.68
SDC1-203ENST00000403076 SLC39A11Q8N1S5 342 aa19.3■□□□□ 0.68
SDC1-203ENST00000403076 UBR7Q8N806 425 aa19.3■□□□□ 0.68
SDC1-203ENST00000403076 RBBP8NLQ8NC74 664 aaPredicted RBP19.3■□□□□ 0.68
SDC1-203ENST00000403076 DNAJC7Q99615 494 aa19.3■□□□□ 0.68
SDC1-203ENST00000403076 GPR88Q9GZN0 384 aa19.3■□□□□ 0.68
SDC1-203ENST00000403076 DNAI2Q9GZS0 605 aa19.3■□□□□ 0.68
SDC1-203ENST00000403076 FAM124BQ9H5Z6 455 aaPredicted RBP19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms