RNA–Protein interactions for RNA: ENST00000399082.7

HLA-DQB1-203, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

BASIC

Gene HLA-DQB1, Length 1,219 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-203ENST00000399082 ZNF699Q32M78 642 aa13.34□□□□□ -0.27
HLA-DQB1-203ENST00000399082 USP41Q3LFD5 358 aa13.34□□□□□ -0.27
HLA-DQB1-203ENST00000399082 DPY19L2P1Q6NXN4 242 aa13.34□□□□□ -0.27
HLA-DQB1-203ENST00000399082 PRSS55Q6UWB4 352 aaPredicted RBP13.34□□□□□ -0.27
HLA-DQB1-203ENST00000399082 DSTYKQ6XUX3 929 aa13.34□□□□□ -0.27
HLA-DQB1-203ENST00000399082 TMC7Q7Z402 723 aa13.34□□□□□ -0.27
HLA-DQB1-203ENST00000399082 GAS2L3Q86XJ1 694 aa13.34□□□□□ -0.27
HLA-DQB1-203ENST00000399082 CREBRFQ8IUR6 639 aa13.34□□□□□ -0.27
HLA-DQB1-203ENST00000399082 FBXL13Q8NEE6 735 aa13.34□□□□□ -0.27
HLA-DQB1-203ENST00000399082 KBTBD7Q8WVZ9 684 aa13.34□□□□□ -0.27
HLA-DQB1-203ENST00000399082 PIK3R5Q8WYR1 880 aa13.34□□□□□ -0.27
HLA-DQB1-203ENST00000399082 RTP3Q9BQQ7 232 aa13.34□□□□□ -0.27
HLA-DQB1-203ENST00000399082 TTPALQ9BTX7 342 aa13.34□□□□□ -0.27
HLA-DQB1-203ENST00000399082 SDCBP2Q9H190 292 aa13.34□□□□□ -0.27
HLA-DQB1-203ENST00000399082 PUF60Q9UHX1 559 aaKnown RBP13.34□□□□□ -0.27
HLA-DQB1-203ENST00000399082 IRAK3Q9Y616 596 aa13.34□□□□□ -0.27
HLA-DQB1-203ENST00000399082 PLXNA3P51805 1871 aa13.33□□□□□ -0.27
HLA-DQB1-203ENST00000399082 C2orf71A6NGG8 1288 aa13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 LRRC10BA6NIK2 292 aa13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 SMTNL1A8MU46 457 aa13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 C2CD2LO14523 706 aa13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 CYB561D2O14569 222 aa13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 SYN3O14994 580 aa13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 HCRTO43612 131 aa13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 TRAPPC3O43617 180 aa13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 CAVIN2O95810 425 aa13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 RPL17P18621 184 aaKnown RBP13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 TYMPP19971 482 aa13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 PAX3P23760 479 aa13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 ASPAP45381 313 aa13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 NOP14P78316 857 aaKnown RBP13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 VWA3BQ502W6 1294 aa13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 VARS2Q5ST30 1063 aaKnown RBP13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 WSCD1Q658N2 575 aa13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 OSTM1Q86WC4 334 aa13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 CEP57Q86XR8 500 aa13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 PDCL2Q8N4E4 241 aa13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 MRPL43Q8N983 215 aaKnown RBP13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 RIN2Q8WYP3 895 aaPredicted RBP13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 CLSTN3Q9BQT9 956 aa13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 NDST4Q9H3R1 872 aa13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 SMYD3Q9H7B4 428 aa13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 RXFP1Q9HBX9 757 aa13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 ENTPD7Q9NQZ7 604 aa13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 RAB20Q9NX57 234 aa13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 MAGEC2Q9UBF1 373 aaPredicted RBP13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 MTRRQ9UBK8 725 aa13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 STK39Q9UEW8 545 aa13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 SNX9Q9Y5X1 595 aa13.33□□□□□ -0.28
HLA-DQB1-203ENST00000399082 P4HA2O15460 535 aa13.32□□□□□ -0.28
HLA-DQB1-203ENST00000399082 OAZ2O95190 189 aa13.32□□□□□ -0.28
HLA-DQB1-203ENST00000399082 CXCL14O95715 111 aa13.32□□□□□ -0.28
HLA-DQB1-203ENST00000399082 URODP06132 367 aa13.32□□□□□ -0.28
HLA-DQB1-203ENST00000399082 CNPP09543 421 aaKnown RBP13.32□□□□□ -0.28
HLA-DQB1-203ENST00000399082 ODC1P11926 461 aa13.32□□□□□ -0.28
HLA-DQB1-203ENST00000399082 GTF2F1P35269 517 aaKnown RBP eCLIP13.32□□□□□ -0.28
HLA-DQB1-203ENST00000399082 COPB1P53618 953 aaKnown RBP13.32□□□□□ -0.28
HLA-DQB1-203ENST00000399082 APBA1Q02410 837 aa13.32□□□□□ -0.28
HLA-DQB1-203ENST00000399082 MYO1EQ12965 1108 aa13.32□□□□□ -0.28
HLA-DQB1-203ENST00000399082 SMC1AQ14683 1233 aaKnown RBP13.32□□□□□ -0.28
HLA-DQB1-203ENST00000399082 SGSM1Q2NKQ1 1148 aa13.32□□□□□ -0.28
HLA-DQB1-203ENST00000399082 WDR72Q3MJ13 1102 aa13.32□□□□□ -0.28
HLA-DQB1-203ENST00000399082 GPR65Q8IYL9 337 aa13.32□□□□□ -0.28
HLA-DQB1-203ENST00000399082 TOP6BLQ8N6T0 577 aa13.32□□□□□ -0.28
HLA-DQB1-203ENST00000399082 TAF4BQ92750 862 aa13.32□□□□□ -0.28
HLA-DQB1-203ENST00000399082 TATDN2Q93075 761 aa13.32□□□□□ -0.28
HLA-DQB1-203ENST00000399082 TMEM209Q96SK2 561 aa13.32□□□□□ -0.28
HLA-DQB1-203ENST00000399082 ARID3AQ99856 593 aa13.32□□□□□ -0.28
HLA-DQB1-203ENST00000399082 CRACR2AQ9BSW2 395 aa13.32□□□□□ -0.28
HLA-DQB1-203ENST00000399082 VPS16Q9H269 839 aa13.32□□□□□ -0.28
HLA-DQB1-203ENST00000399082 NGRNQ9NPE2 291 aaKnown RBP13.32□□□□□ -0.28
HLA-DQB1-203ENST00000399082 LMCD1Q9NZU5 365 aa13.32□□□□□ -0.28
HLA-DQB1-203ENST00000399082 NXF1Q9UBU9 619 aaKnown RBP13.32□□□□□ -0.28
HLA-DQB1-203ENST00000399082 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.31□□□□□ -0.28
HLA-DQB1-203ENST00000399082 BECN2A8MW95 431 aa13.31□□□□□ -0.28
HLA-DQB1-203ENST00000399082 GABRDO14764 452 aa13.31□□□□□ -0.28
HLA-DQB1-203ENST00000399082 TEX28O15482 410 aa13.31□□□□□ -0.28
HLA-DQB1-203ENST00000399082 N4BP1O75113 896 aaKnown RBP13.31□□□□□ -0.28
HLA-DQB1-203ENST00000399082 PRKCSHP14314 528 aaPredicted RBP13.31□□□□□ -0.28
HLA-DQB1-203ENST00000399082 SLC9A1P19634 815 aa13.31□□□□□ -0.28
HLA-DQB1-203ENST00000399082 RAP1GAPP47736 663 aa13.31□□□□□ -0.28
HLA-DQB1-203ENST00000399082 CDH8P55286 799 aa13.31□□□□□ -0.28
HLA-DQB1-203ENST00000399082 KCNMA1Q12791 1236 aa13.31□□□□□ -0.28
HLA-DQB1-203ENST00000399082 PSMD5Q16401 504 aa13.31□□□□□ -0.28
HLA-DQB1-203ENST00000399082 PTPROQ16827 1216 aa13.31□□□□□ -0.28
HLA-DQB1-203ENST00000399082 CCDC142Q17RM4 750 aa13.31□□□□□ -0.28
HLA-DQB1-203ENST00000399082 TCEAL5Q5H9L2 206 aa13.31□□□□□ -0.28
HLA-DQB1-203ENST00000399082 ZNF667Q5HYK9 610 aa13.31□□□□□ -0.28
HLA-DQB1-203ENST00000399082 OVOS1Q6IE37 1185 aa13.31□□□□□ -0.28
HLA-DQB1-203ENST00000399082 PDE12Q6L8Q7 609 aaKnown RBP13.31□□□□□ -0.28
HLA-DQB1-203ENST00000399082 SCARA5Q6ZMJ2 495 aa13.31□□□□□ -0.28
HLA-DQB1-203ENST00000399082 ARHGEF19Q8IW93 802 aa13.31□□□□□ -0.28
HLA-DQB1-203ENST00000399082 RNF214Q8ND24 703 aa13.31□□□□□ -0.28
HLA-DQB1-203ENST00000399082 APPL2Q8NEU8 664 aa13.31□□□□□ -0.28
HLA-DQB1-203ENST00000399082 OR10T2Q8NGX3 314 aa13.31□□□□□ -0.28
HLA-DQB1-203ENST00000399082 KAT5Q92993 513 aa13.31□□□□□ -0.28
HLA-DQB1-203ENST00000399082 KLHL5Q96PQ7 755 aa13.31□□□□□ -0.28
HLA-DQB1-203ENST00000399082 MRPL45Q9BRJ2 306 aaKnown RBP13.31□□□□□ -0.28
HLA-DQB1-203ENST00000399082 BCO2Q9BYV7 579 aa13.31□□□□□ -0.28
HLA-DQB1-203ENST00000399082 NIF3L1Q9GZT8 377 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms