RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 BIN1O00499 593 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 CILPO75339 1184 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 HLA-DRAP01903 254 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 KRT13P13646 458 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 PON1P27169 355 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 RABGGTBP53611 331 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 SMC1AQ14683 1233 aaKnown RBP7.54□□□□□ -1.2
LIMA1-202ENST00000394943 KLHL23Q8NBE8 558 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 SHC3Q92529 594 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 GUCD1Q96NT3 240 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 C17orf80Q9BSJ5 609 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 SDCBP2Q9H190 292 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 CYLDQ9NQC7 956 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 ANAPC1Q9H1A4 1944 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 GRXCR1A8MXD5 290 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 H7C4K7 107 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 TRAPPC3O43617 180 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 PAEPP09466 180 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 LHX1P48742 406 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 CLCN4P51793 760 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 NCOA4Q13772 614 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 USP41Q3LFD5 358 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 ANKS3Q6ZW76 656 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 FUBP3Q96I24 572 aaKnown RBP eCLIP7.54□□□□□ -1.2
LIMA1-202ENST00000394943 GPR62Q9BZJ7 368 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 KIAA1257Q9ULG3 409 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 GINS2Q9Y248 185 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 GOLGA8IPA6NC78 632 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 GOLGA8JA6NMD2 632 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 ODC1P11926 461 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 MYOGP15173 224 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 SEZ6Q53EL9 994 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 SNX30Q5VWJ9 437 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 PDCL2Q8N4E4 241 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 EFHBQ8N7U6 833 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 APPL2Q8NEU8 664 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 SPATA17Q96L03 361 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 NIF3L1Q9GZT8 377 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 ZNF576Q9H609 170 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 HCSTQ9UBK5 93 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 FBXW11Q9UKB1 542 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 CDH9Q9ULB4 789 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 MAPK8IP1Q9UQF2 711 aa7.54□□□□□ -1.2
LIMA1-202ENST00000394943 TCF3P15923 654 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 PFKLP17858 780 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 IGFBP6P24592 240 aaPredicted RBP7.53□□□□□ -1.2
LIMA1-202ENST00000394943 MXI1P50539 228 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 CFAP221Q4G0U5 840 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 TRIM65Q6PJ69 517 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 PPFIBP1Q86W92 1011 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 ABI1Q8IZP0 508 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 TAS1R2Q8TE23 839 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 MSLNLQ96KJ4 702 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 KLHL5Q96PQ7 755 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 CLSTN3Q9BQT9 956 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 TLR9Q9NR96 1032 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 KLK14Q9P0G3 267 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 PCDHGC3Q9UN70 934 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 L1RE1Q9UN81 338 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 STXBP5LQ9Y2K9 1186 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 NUB1Q9Y5A7 615 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 CLASP2O75122 1294 aaKnown RBP7.53□□□□□ -1.2
LIMA1-202ENST00000394943 POMCP01189 267 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 ITGB3P05106 788 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 ANXA13P27216 316 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 POLR2BP30876 1174 aaKnown RBP7.53□□□□□ -1.2
LIMA1-202ENST00000394943 PRKCIP41743 596 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 NDUFV1P49821 464 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 CDK17Q00537 523 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 MYO1EQ12965 1108 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 GPR17Q13304 367 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 KLHDC7AQ5VTJ3 777 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 TAS1R1Q7RTX1 841 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 TMCO2Q7Z6W1 182 aaPredicted RBP7.53□□□□□ -1.2
LIMA1-202ENST00000394943 GAS2L3Q86XJ1 694 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 TCEAL8Q8IYN2 117 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 FAM71AQ8IYT1 594 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 BAP1Q92560 729 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 MRFAP1L1Q96HT8 127 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 HPDLQ96IR7 371 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 POP1Q99575 1024 aaKnown RBP7.53□□□□□ -1.2
LIMA1-202ENST00000394943 TCHPQ9BT92 498 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 TTPALQ9BTX7 342 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 MTMR10Q9NXD2 777 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 UTP18Q9Y5J1 556 aaKnown RBP eCLIP7.53□□□□□ -1.2
LIMA1-202ENST00000394943 GLUD2P49448 558 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 MYL7Q01449 175 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 ADAM15Q13444 863 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 PPP2R2DQ66LE6 453 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 PHLDB3Q6NSJ2 640 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 BEND5Q7L4P6 421 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 OSTM1Q86WC4 334 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 AOPEPQ8N6M6 819 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 SENP8Q96LD8 212 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 KREMEN1Q96MU8 473 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 FNBP1Q96RU3 617 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 TTLL2Q9BWV7 592 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 LRRC3Q9BY71 257 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 INTS2Q9H0H0 1204 aaKnown RBP7.53□□□□□ -1.2
LIMA1-202ENST00000394943 S1PR5Q9H228 398 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms