RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 WDR27A2RRH5 827 aa14.39□□□□□ -0.11
VPS28-202ENST00000377348 CETN3O15182 167 aa14.39□□□□□ -0.11
VPS28-202ENST00000377348 OAZ2O95190 189 aa14.39□□□□□ -0.11
VPS28-202ENST00000377348 TRIM49P0CI25 452 aa14.39□□□□□ -0.11
VPS28-202ENST00000377348 TRIM49CP0CI26 452 aa14.39□□□□□ -0.11
VPS28-202ENST00000377348 HOXB8P17481 243 aaPredicted RBP14.39□□□□□ -0.11
VPS28-202ENST00000377348 TYMPP19971 482 aa14.39□□□□□ -0.11
VPS28-202ENST00000377348 PAX3P23760 479 aa14.39□□□□□ -0.11
VPS28-202ENST00000377348 VAMP7P51809 220 aa14.39□□□□□ -0.11
VPS28-202ENST00000377348 STX17P56962 302 aa14.39□□□□□ -0.11
VPS28-202ENST00000377348 CLDN10P78369 228 aa14.39□□□□□ -0.11
VPS28-202ENST00000377348 BIRC3Q13489 604 aa14.39□□□□□ -0.11
VPS28-202ENST00000377348 TDRD10Q5VZ19 366 aaKnown RBP14.39□□□□□ -0.11
VPS28-202ENST00000377348 OVOS1Q6IE37 1185 aa14.39□□□□□ -0.11
VPS28-202ENST00000377348 TMC2Q8TDI7 906 aa14.39□□□□□ -0.11
VPS28-202ENST00000377348 NELFBQ8WX92 580 aa14.39□□□□□ -0.11
VPS28-202ENST00000377348 ELMO3Q96BJ8 720 aa14.39□□□□□ -0.11
VPS28-202ENST00000377348 DHTKD1Q96HY7 919 aaPredicted RBP14.39□□□□□ -0.11
VPS28-202ENST00000377348 HPDLQ96IR7 371 aa14.39□□□□□ -0.11
VPS28-202ENST00000377348 TMEM209Q96SK2 561 aa14.39□□□□□ -0.11
VPS28-202ENST00000377348 FBXW11Q9UKB1 542 aa14.39□□□□□ -0.11
VPS28-202ENST00000377348 L1RE1Q9UN81 338 aa14.39□□□□□ -0.11
VPS28-202ENST00000377348 R3HCC1Q9Y3T6 440 aaKnown RBP14.39□□□□□ -0.11
VPS28-202ENST00000377348 SNX9Q9Y5X1 595 aa14.39□□□□□ -0.11
VPS28-202ENST00000377348 TCF20Q9UGU0 1960 aaKnown RBP14.39□□□□□ -0.11
VPS28-202ENST00000377348 MAPK13O15264 365 aa14.38□□□□□ -0.11
VPS28-202ENST00000377348 C4BPAP04003 597 aaKnown RBP14.38□□□□□ -0.11
VPS28-202ENST00000377348 CYP11A1P05108 521 aa14.38□□□□□ -0.11
VPS28-202ENST00000377348 CDR1P51861 262 aa14.38□□□□□ -0.11
VPS28-202ENST00000377348 MYL6P60660 151 aa14.38□□□□□ -0.11
VPS28-202ENST00000377348 LRRC63Q05C16 580 aa14.38□□□□□ -0.11
VPS28-202ENST00000377348 SMAD2Q15796 467 aaKnown RBP14.38□□□□□ -0.11
VPS28-202ENST00000377348 PUS10Q3MIT2 529 aaKnown RBP14.38□□□□□ -0.11
VPS28-202ENST00000377348 INTS8Q75QN2 995 aaKnown RBP14.38□□□□□ -0.11
VPS28-202ENST00000377348 ZC3H3Q8IXZ2 948 aaKnown RBP14.38□□□□□ -0.11
VPS28-202ENST00000377348 TRIML1Q8N9V2 468 aa14.38□□□□□ -0.11
VPS28-202ENST00000377348 OR10T2Q8NGX3 314 aa14.38□□□□□ -0.11
VPS28-202ENST00000377348 ADAMTS19Q8TE59 1207 aa14.38□□□□□ -0.11
VPS28-202ENST00000377348 SUSD6Q92537 303 aa14.38□□□□□ -0.11
VPS28-202ENST00000377348 DUSP9Q99956 384 aaKnown RBP14.38□□□□□ -0.11
VPS28-202ENST00000377348 RTP3Q9BQQ7 232 aa14.38□□□□□ -0.11
VPS28-202ENST00000377348 ADAM7Q9H2U9 754 aa14.38□□□□□ -0.11
VPS28-202ENST00000377348 PLEKHA4Q9H4M7 779 aa14.38□□□□□ -0.11
VPS28-202ENST00000377348 MMRN2Q9H8L6 949 aa14.38□□□□□ -0.11
VPS28-202ENST00000377348 SFXN1Q9H9B4 322 aa14.38□□□□□ -0.11
VPS28-202ENST00000377348 TSC2P49815 1807 aa14.38□□□□□ -0.11
VPS28-202ENST00000377348 HUS1O60921 280 aa14.37□□□□□ -0.11
VPS28-202ENST00000377348 PHACTR2O75167 634 aa14.37□□□□□ -0.11
VPS28-202ENST00000377348 VNN1O95497 513 aa14.37□□□□□ -0.11
VPS28-202ENST00000377348 C8AP07357 584 aa14.37□□□□□ -0.11
VPS28-202ENST00000377348 EPB41P11171 864 aaKnown RBP14.37□□□□□ -0.11
VPS28-202ENST00000377348 KRT13P13646 458 aa14.37□□□□□ -0.11
VPS28-202ENST00000377348 CPB1P15086 417 aa14.37□□□□□ -0.11
VPS28-202ENST00000377348 PPP1R2P41236 205 aa14.37□□□□□ -0.11
VPS28-202ENST00000377348 GCLMP48507 274 aa14.37□□□□□ -0.11
VPS28-202ENST00000377348 FKBP3Q00688 224 aaKnown RBP14.37□□□□□ -0.11
VPS28-202ENST00000377348 PPP3CAQ08209 521 aa14.37□□□□□ -0.11
VPS28-202ENST00000377348 MYO1EQ12965 1108 aa14.37□□□□□ -0.11
VPS28-202ENST00000377348 PAK1Q13153 545 aa14.37□□□□□ -0.11
VPS28-202ENST00000377348 TRPC3Q13507 836 aa14.37□□□□□ -0.11
VPS28-202ENST00000377348 TTI2Q6NXR4 508 aa14.37□□□□□ -0.11
VPS28-202ENST00000377348 OSTM1Q86WC4 334 aa14.37□□□□□ -0.11
VPS28-202ENST00000377348 PDCL2Q8N4E4 241 aa14.37□□□□□ -0.11
VPS28-202ENST00000377348 MKNK1Q9BUB5 465 aa14.37□□□□□ -0.11
VPS28-202ENST00000377348 GDAP2Q9NXN4 497 aa14.37□□□□□ -0.11
VPS28-202ENST00000377348 CUL9Q8IWT3 2517 aa14.37□□□□□ -0.11
VPS28-202ENST00000377348 CCDC195A0A1B0GUA6 201 aa14.36□□□□□ -0.11
VPS28-202ENST00000377348 ARHGEF37A1IGU5 675 aa14.36□□□□□ -0.11
VPS28-202ENST00000377348 HCRTO43612 131 aa14.36□□□□□ -0.11
VPS28-202ENST00000377348 ZMYND10O75800 440 aa14.36□□□□□ -0.11
VPS28-202ENST00000377348 ABLIM3O94929 683 aa14.36□□□□□ -0.11
VPS28-202ENST00000377348 SEC24AO95486 1093 aa14.36□□□□□ -0.11
VPS28-202ENST00000377348 C1RP00736 705 aa14.36□□□□□ -0.11
VPS28-202ENST00000377348 AP3M2P53677 418 aa14.36□□□□□ -0.11
VPS28-202ENST00000377348 ITIH3Q06033 890 aa14.36□□□□□ -0.11
VPS28-202ENST00000377348 SOWAHAQ2M3V2 549 aa14.36□□□□□ -0.11
VPS28-202ENST00000377348 LIN9Q5TKA1 542 aa14.36□□□□□ -0.11
VPS28-202ENST00000377348 CES5AQ6NT32 575 aa14.36□□□□□ -0.11
VPS28-202ENST00000377348 RNF19BQ6ZMZ0 732 aa14.36□□□□□ -0.11
VPS28-202ENST00000377348 SV2AQ7L0J3 742 aa14.36□□□□□ -0.11
VPS28-202ENST00000377348 GPR149Q86SP6 731 aa14.36□□□□□ -0.11
VPS28-202ENST00000377348 METTL23Q86XA0 190 aa14.36□□□□□ -0.11
VPS28-202ENST00000377348 ZNF461Q8TAF7 563 aa14.36□□□□□ -0.11
VPS28-202ENST00000377348 SLC7A14Q8TBB6 771 aa14.36□□□□□ -0.11
VPS28-202ENST00000377348 HDAC7Q8WUI4 952 aa14.36□□□□□ -0.11
VPS28-202ENST00000377348 ZNF707Q96C28 371 aaPredicted RBP14.36□□□□□ -0.11
VPS28-202ENST00000377348 PGLYRP2Q96PD5 576 aa14.36□□□□□ -0.11
VPS28-202ENST00000377348 UHRF1Q96T88 793 aaPredicted RBP14.36□□□□□ -0.11
VPS28-202ENST00000377348 COL25A1Q9BXS0 654 aaPredicted RBP14.36□□□□□ -0.11
VPS28-202ENST00000377348 XYLT2Q9H1B5 865 aa14.36□□□□□ -0.11
VPS28-202ENST00000377348 POMKQ9H5K3 350 aa14.36□□□□□ -0.11
VPS28-202ENST00000377348 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.36□□□□□ -0.111e-6■■■■■ 37.9
VPS28-202ENST00000377348 DPP7Q9UHL4 492 aa14.36□□□□□ -0.11
VPS28-202ENST00000377348 DSEQ9UL01 958 aa14.36□□□□□ -0.11
VPS28-202ENST00000377348 FAM50BQ9Y247 325 aa14.36□□□□□ -0.11
VPS28-202ENST00000377348 BDP1A6H8Y1 2624 aa14.36□□□□□ -0.11
VPS28-202ENST00000377348 BICDL2A1A5D9 508 aa14.35□□□□□ -0.11
VPS28-202ENST00000377348 OR6C75A6NL08 312 aa14.35□□□□□ -0.11
VPS28-202ENST00000377348 IKBKBO14920 756 aa14.35□□□□□ -0.11
VPS28-202ENST00000377348 SLC16A3O15427 465 aaKnown RBP14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms