RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 MTHFD1LQ6UB35 978 aa14.34□□□□□ -0.11
COL4A1-201ENST00000375820 DIS3LQ8TF46 1054 aaKnown RBP14.34□□□□□ -0.11
COL4A1-201ENST00000375820 FBXO2Q9UK22 296 aaPredicted RBP14.34□□□□□ -0.11
COL4A1-201ENST00000375820 S100A5P33763 92 aa14.33□□□□□ -0.11
COL4A1-201ENST00000375820 EPHA7Q15375 998 aa14.33□□□□□ -0.11
COL4A1-201ENST00000375820 SPATA18Q8TC71 538 aa14.33□□□□□ -0.11
COL4A1-201ENST00000375820 NCAM1P13591 858 aa14.33□□□□□ -0.11
COL4A1-201ENST00000375820 GTF2H1P32780 548 aa14.33□□□□□ -0.11
COL4A1-201ENST00000375820 TAP1Q03518 808 aa14.33□□□□□ -0.11
COL4A1-201ENST00000375820 ARL2BPQ9Y2Y0 163 aa14.33□□□□□ -0.11
COL4A1-201ENST00000375820 ATP6V1B1P15313 513 aa14.33□□□□□ -0.12
COL4A1-201ENST00000375820 C10orf120Q5SQS8 335 aa14.33□□□□□ -0.12
COL4A1-201ENST00000375820 STOX1Q6ZVD7 989 aa14.33□□□□□ -0.12
COL4A1-201ENST00000375820 PODNQ7Z5L7 613 aa14.33□□□□□ -0.12
COL4A1-201ENST00000375820 DDX50Q9BQ39 737 aaKnown RBP14.33□□□□□ -0.12
COL4A1-201ENST00000375820 NPHP4O75161 1426 aaPredicted RBP14.33□□□□□ -0.12
COL4A1-201ENST00000375820 NCALDP61601 193 aa14.33□□□□□ -0.12
COL4A1-201ENST00000375820 TRIP10Q15642 601 aa14.33□□□□□ -0.12
COL4A1-201ENST00000375820 MDM1Q8TC05 714 aa14.33□□□□□ -0.12
COL4A1-201ENST00000375820 SNX12Q9UMY4 172 aa14.33□□□□□ -0.12
COL4A1-201ENST00000375820 RAD51CO43502 376 aa14.33□□□□□ -0.12
COL4A1-201ENST00000375820 LZTS3O60299 673 aaPredicted RBP14.33□□□□□ -0.12
COL4A1-201ENST00000375820 SMNDC1O75940 238 aaKnown RBP eCLIP14.33□□□□□ -0.12
COL4A1-201ENST00000375820 FMO5P49326 533 aa14.33□□□□□ -0.12
COL4A1-201ENST00000375820 CDC16Q13042 620 aa14.33□□□□□ -0.12
COL4A1-201ENST00000375820 PIF1Q9H611 641 aa14.33□□□□□ -0.12
COL4A1-201ENST00000375820 ABI2Q9NYB9 513 aaPredicted RBP14.33□□□□□ -0.12
COL4A1-201ENST00000375820 KCNH4Q9UQ05 1017 aa14.33□□□□□ -0.12
COL4A1-201ENST00000375820 AXIN2Q9Y2T1 843 aa14.33□□□□□ -0.12
COL4A1-201ENST00000375820 AATKQ6ZMQ8 1374 aa14.33□□□□□ -0.12
COL4A1-201ENST00000375820 FAM47DPA6NHR8 397 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 RHOBTB1O94844 696 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 NPTXRO95502 500 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 ABCE1P61221 599 aaKnown RBP14.32□□□□□ -0.12
COL4A1-201ENST00000375820 RBP5P82980 135 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 EMC2Q15006 297 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 ENOSF1Q7L5Y1 443 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 TBC1D19Q8N5T2 526 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 ZNF614Q8N883 585 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 BBS2Q9BXC9 721 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 UNKQ9C0B0 810 aaKnown RBP14.32□□□□□ -0.12
COL4A1-201ENST00000375820 NAGPAQ9UK23 515 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 ATP7BP35670 1465 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 SKAP2O75563 359 aaPredicted RBP14.32□□□□□ -0.12
COL4A1-201ENST00000375820 RPS6KA5O75582 802 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 GSNP06396 782 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 SERPINB10P48595 397 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 ITGA8P53708 1063 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 EPN3Q9H201 632 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 PSMC3IPQ9P2W1 217 aaPredicted RBP14.32□□□□□ -0.12
COL4A1-201ENST00000375820 ASB14A6NK59 587 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 NFIBO00712 420 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 PMPCBO75439 489 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 GALNTL6Q49A17 601 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 GPAT2Q6NUI2 795 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 TRIM62Q9BVG3 475 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 RPAP1Q9BWH6 1393 aaPredicted RBP14.32□□□□□ -0.12
COL4A1-201ENST00000375820 PGK2P07205 417 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 COMTP21964 271 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 ZNF157P51786 506 aaPredicted RBP14.32□□□□□ -0.12
COL4A1-201ENST00000375820 GRIN1Q05586 938 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 TAF1CQ15572 869 aaPredicted RBP14.32□□□□□ -0.12
COL4A1-201ENST00000375820 KYNUQ16719 465 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 OSBPL5Q9H0X9 879 aaPredicted RBP14.32□□□□□ -0.12
COL4A1-201ENST00000375820 AFF2P51816 1311 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 PITPNM2Q9BZ72 1349 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 ERVK-7P63135 1459 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 CFAP73A6NFT4 308 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 B2RBV5 119 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 DYNC1I2Q13409 638 aaKnown RBP14.32□□□□□ -0.12
COL4A1-201ENST00000375820 BYSLQ13895 437 aaKnown RBP14.32□□□□□ -0.12
COL4A1-201ENST00000375820 BNIPLQ7Z465 357 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 USP11P51784 963 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 EFCAB12Q6NXP0 572 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 CLEC4GQ6UXB4 293 aa14.32□□□□□ -0.12
COL4A1-201ENST00000375820 SNRNP27Q8WVK2 155 aaKnown RBP14.32□□□□□ -0.12
COL4A1-201ENST00000375820 PLEKHG1Q9ULL1 1385 aa14.31□□□□□ -0.12
COL4A1-201ENST00000375820 ADAMTS12P58397 1594 aa14.31□□□□□ -0.12
COL4A1-201ENST00000375820 KBTBD13C9JR72 458 aa14.31□□□□□ -0.12
COL4A1-201ENST00000375820 ITGA4P13612 1032 aa14.31□□□□□ -0.12
COL4A1-201ENST00000375820 HPCAP84074 193 aa14.31□□□□□ -0.12
COL4A1-201ENST00000375820 DENND5BQ6ZUT9 1274 aa14.31□□□□□ -0.12
COL4A1-201ENST00000375820 KCTD10Q9H3F6 313 aa14.31□□□□□ -0.12
COL4A1-201ENST00000375820 MYMKA6NI61 221 aa14.31□□□□□ -0.12
COL4A1-201ENST00000375820 UCHL3P15374 230 aa14.31□□□□□ -0.12
COL4A1-201ENST00000375820 SLC1A1P43005 524 aa14.31□□□□□ -0.12
COL4A1-201ENST00000375820 PRKCEQ02156 737 aa14.31□□□□□ -0.12
COL4A1-201ENST00000375820 PAN2Q504Q3 1202 aaKnown RBP14.31□□□□□ -0.12
COL4A1-201ENST00000375820 ARMC2Q8NEN0 867 aa14.31□□□□□ -0.12
COL4A1-201ENST00000375820 RANBP17Q9H2T7 1088 aaKnown RBP14.31□□□□□ -0.12
COL4A1-201ENST00000375820 TUFT1Q9NNX1 390 aa14.31□□□□□ -0.12
COL4A1-201ENST00000375820 SERPINB5P36952 375 aa14.31□□□□□ -0.12
COL4A1-201ENST00000375820 EFNA5P52803 228 aa14.31□□□□□ -0.12
COL4A1-201ENST00000375820 CCDC60Q8IWA6 550 aaPredicted RBP14.31□□□□□ -0.12
COL4A1-201ENST00000375820 CCT8L2Q96SF2 557 aa14.31□□□□□ -0.12
COL4A1-201ENST00000375820 KCNF1Q9H3M0 494 aa14.31□□□□□ -0.12
COL4A1-201ENST00000375820 PRG3Q9Y2Y8 225 aaPredicted RBP14.31□□□□□ -0.12
COL4A1-201ENST00000375820 TRIM66O15016 1216 aa14.31□□□□□ -0.12
COL4A1-201ENST00000375820 TARSP26639 723 aaKnown RBP14.31□□□□□ -0.12
COL4A1-201ENST00000375820 NUDT18Q6ZVK8 323 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms