RNA–Protein interactions for RNA: ENST00000292478.8

PTCD1-201, Transcript of pentatricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD1, Length 5,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-201ENST00000292478 PGM1P36871 562 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 RGS7P49802 495 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 ZBTB17Q13105 803 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 ATG4CQ96DT6 458 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 CLMNQ96JQ2 1002 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 ZIM3Q96PE6 472 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 RUSC1Q9BVN2 902 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 TMEM39BQ9GZU3 492 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 ING2Q9H160 280 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 DEFB129Q9H1M3 183 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 ABCF3Q9NUQ8 709 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 GTPBP10A4D1E9 387 aaKnown RBP13.4□□□□□ -0.26
PTCD1-201ENST00000292478 ESRRBO95718 433 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 GMPSP49915 693 aaPredicted RBP13.4□□□□□ -0.26
PTCD1-201ENST00000292478 ITGA8P53708 1063 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 NTRK3Q16288 839 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 CDKAL1Q5VV42 579 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 CENPPQ6IPU0 288 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 ANGPTL8Q6UXH0 198 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 SMIM5Q71RC9 77 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 ANKRD13AQ8IZ07 590 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 ZNF526Q8TF50 670 aaPredicted RBP13.4□□□□□ -0.26
PTCD1-201ENST00000292478 FUCA2Q9BTY2 467 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 GGA3Q9NZ52 723 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 RNF103-CHMP3A0A140T963 221 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 CD44P16070 742 aaKnown RBP13.4□□□□□ -0.26
PTCD1-201ENST00000292478 HADHAP40939 763 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 ERVK-24P63145 666 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 ZNF484Q5JVG2 852 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 HABP4Q5JVS0 413 aaKnown RBP13.4□□□□□ -0.26
PTCD1-201ENST00000292478 PAPD7Q5XG87 772 aaKnown RBP13.4□□□□□ -0.26
PTCD1-201ENST00000292478 PRUNE1Q86TP1 453 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 SPATA18Q8TC71 538 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 GPBP1L1Q9HC44 474 aaPredicted RBP13.4□□□□□ -0.26
PTCD1-201ENST00000292478 XAB2Q9HCS7 855 aaKnown RBP13.4□□□□□ -0.26
PTCD1-201ENST00000292478 SARS2Q9NP81 518 aaKnown RBP13.4□□□□□ -0.26
PTCD1-201ENST00000292478 MEGF6O75095 1541 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 MED24O75448 989 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 POLBP06746 335 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 IL1R1P14778 569 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 CARSP49589 748 aaKnown RBP13.4□□□□□ -0.26
PTCD1-201ENST00000292478 PTK7Q13308 1070 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 GIT2Q14161 759 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 LCA5Q86VQ0 697 aa13.4□□□□□ -0.26
PTCD1-201ENST00000292478 CYBBP04839 570 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 CUL3Q13618 768 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 CAPRIN1Q14444 709 aaKnown RBP13.39□□□□□ -0.27
PTCD1-201ENST00000292478 RBBP7Q16576 425 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 NBPF20Q3BBV1 942 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 SRLQ86TD4 932 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 CMTM5Q96DZ9 223 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 HPDLQ96IR7 371 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 SH2D3AQ9BRG2 576 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 SPON1Q9HCB6 807 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 TCRBV5S4A2TA0A5A2 114 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 F5H423 210 aaPredicted RBP13.39□□□□□ -0.27
PTCD1-201ENST00000292478 OGTO15294 1046 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 RAD23BP54727 409 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 TAF1CQ15572 869 aaPredicted RBP13.39□□□□□ -0.27
PTCD1-201ENST00000292478 TMCO4Q5TGY1 634 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 NOP9Q86U38 636 aaKnown RBP13.39□□□□□ -0.27
PTCD1-201ENST00000292478 C9orf72Q96LT7 481 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 UBQLN1Q9UMX0 589 aaKnown RBP13.39□□□□□ -0.27
PTCD1-201ENST00000292478 ARHGAP10A1A4S6 786 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 ANKRD65E5RJM6 399 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 CST8O60676 142 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 RPS6KA5O75582 802 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 LSP1P33241 339 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 FDFT1P37268 417 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 NDFIP2Q9NV92 336 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 LSM7Q9UK45 103 aaKnown RBP13.39□□□□□ -0.27
PTCD1-201ENST00000292478 GRID1Q9ULK0 1009 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 TMX2Q9Y320 296 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 GOLGA7BQ2TAP0 167 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 DDIASQ8IXT1 998 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 PBXIP1Q96AQ6 731 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.39□□□□□ -0.27
PTCD1-201ENST00000292478 NEMP1O14524 444 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 CYP2C9P11712 490 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 CPT1AP50416 773 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 OCA2Q04671 838 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 PCNX4Q63HM2 1172 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 SH2D3CQ8N5H7 860 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 NOA1Q8NC60 698 aaKnown RBP13.39□□□□□ -0.27
PTCD1-201ENST00000292478 ACTRT1Q8TDG2 376 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 SEC16BQ96JE7 1060 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 CEP19Q96LK0 163 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 TARS2Q9BW92 718 aaKnown RBP13.39□□□□□ -0.27
PTCD1-201ENST00000292478 ZFYVE28Q9HCC9 887 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 ARHGEF38Q9NXL2 777 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 PPLO60437 1756 aa13.39□□□□□ -0.27
PTCD1-201ENST00000292478 TADA2AO75478 443 aa13.38□□□□□ -0.27
PTCD1-201ENST00000292478 WEE2P0C1S8 567 aa13.38□□□□□ -0.27
PTCD1-201ENST00000292478 RBP3P10745 1247 aa13.38□□□□□ -0.27
PTCD1-201ENST00000292478 KLRK1P26718 216 aa13.38□□□□□ -0.27
PTCD1-201ENST00000292478 TAF6P49848 677 aa13.38□□□□□ -0.27
PTCD1-201ENST00000292478 MAPRE1Q15691 268 aaKnown RBP13.38□□□□□ -0.27
PTCD1-201ENST00000292478 E2F4Q16254 413 aa13.38□□□□□ -0.27
PTCD1-201ENST00000292478 SETD3Q86TU7 594 aaPredicted RBP13.38□□□□□ -0.27
PTCD1-201ENST00000292478 CCNJLQ8IV13 435 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms