RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 PARVAQ9NVD7 372 aa21.3■■□□□ 1
VPS53-201ENST00000291074 PCNTO95613 3336 aa21.3■■□□□ 1
VPS53-201ENST00000291074 GMNCA6NCL1 334 aa21.3■■□□□ 1
VPS53-201ENST00000291074 LGR5O75473 907 aa21.3■■□□□ 1
VPS53-201ENST00000291074 MAGEA9P43362 315 aa21.3■■□□□ 1
VPS53-201ENST00000291074 ITGA8P53708 1063 aa21.3■■□□□ 1
VPS53-201ENST00000291074 MCL1Q07820 350 aa21.3■■□□□ 1
VPS53-201ENST00000291074 RHBDF2Q6PJF5 856 aa21.3■■□□□ 1
VPS53-201ENST00000291074 DHX37Q8IY37 1157 aaKnown RBP21.3■■□□□ 1
VPS53-201ENST00000291074 KATNAL2Q8IYT4 538 aa21.3■■□□□ 1
VPS53-201ENST00000291074 TCP11Q8WWU5 503 aa21.3■■□□□ 1
VPS53-201ENST00000291074 TFAP2BQ92481 460 aa21.3■■□□□ 1
VPS53-201ENST00000291074 NIF3L1Q9GZT8 377 aa21.3■■□□□ 1
VPS53-201ENST00000291074 PDGFCQ9NRA1 345 aa21.3■■□□□ 1
VPS53-201ENST00000291074 IGKV6-21A0A0C4DH24 114 aa21.29■■□□□ 1
VPS53-201ENST00000291074 INO80B-WBP1J3KQ70 363 aa21.29■■□□□ 1
VPS53-201ENST00000291074 MXD4Q14582 209 aaPredicted RBP21.29■■□□□ 1
VPS53-201ENST00000291074 DUOXA2Q1HG44 320 aa21.29■■□□□ 1
VPS53-201ENST00000291074 B4GALNT4Q76KP1 1039 aa21.29■■□□□ 1
VPS53-201ENST00000291074 ERO1BQ86YB8 467 aa21.29■■□□□ 1
VPS53-201ENST00000291074 TMEM192Q8IY95 271 aa21.29■■□□□ 1
VPS53-201ENST00000291074 MAIP1Q8WWC4 291 aa21.29■■□□□ 1
VPS53-201ENST00000291074 ACSF2Q96CM8 615 aaPredicted RBP21.29■■□□□ 1
VPS53-201ENST00000291074 SNF8Q96H20 258 aa21.29■■□□□ 1
VPS53-201ENST00000291074 MCEEQ96PE7 176 aa21.29■■□□□ 1
VPS53-201ENST00000291074 INO80BQ9C086 356 aaPredicted RBP21.29■■□□□ 1
VPS53-201ENST00000291074 KRT10P13645 584 aa21.29■■□□□ 1
VPS53-201ENST00000291074 OGDHQ02218 1023 aa21.29■■□□□ 1
VPS53-201ENST00000291074 TRPC3Q13507 836 aa21.29■■□□□ 1
VPS53-201ENST00000291074 TTLL12Q14166 644 aaPredicted RBP21.29■■□□□ 1
VPS53-201ENST00000291074 ZNF568Q3ZCX4 644 aa21.29■■□□□ 1
VPS53-201ENST00000291074 GPAT2Q6NUI2 795 aa21.29■■□□□ 1
VPS53-201ENST00000291074 ADAM7Q9H2U9 754 aa21.29■■□□□ 1
VPS53-201ENST00000291074 MINDY3Q9H8M7 445 aa21.29■■□□□ 1
VPS53-201ENST00000291074 GAS8O95995 478 aa21.28■■□□□ 1
VPS53-201ENST00000291074 LIG3P49916 1009 aa21.28■■□□□ 1
VPS53-201ENST00000291074 AP3M2P53677 418 aa21.28■■□□□ 1
VPS53-201ENST00000291074 TMEM132AQ24JP5 1023 aa21.28■■□□□ 1
VPS53-201ENST00000291074 CCDC38Q502W7 563 aa21.28■■□□□ 1
VPS53-201ENST00000291074 ZFYVE27Q5T4F4 411 aa21.28■■□□□ 1
VPS53-201ENST00000291074 CYP4A22Q5TCH4 519 aa21.28■■□□□ 1
VPS53-201ENST00000291074 KAZNQ674X7 775 aa21.28■■□□□ 1
VPS53-201ENST00000291074 MMP19Q99542 508 aa21.28■■□□□ 1
VPS53-201ENST00000291074 POLIQ9UNA4 740 aa21.28■■□□□ 1
VPS53-201ENST00000291074 AGTPBP1Q9UPW5 1226 aa21.28■■□□□ 1
VPS53-201ENST00000291074 CSDE1O75534 798 aaKnown RBP21.28■■□□□ 1
VPS53-201ENST00000291074 PAEPP09466 180 aa21.28■■□□□ 1
VPS53-201ENST00000291074 TMEM191BP0C7N4 346 aa21.28■■□□□ 1
VPS53-201ENST00000291074 ATF2P15336 505 aa21.28■■□□□ 1
VPS53-201ENST00000291074 ADCY8P40145 1251 aa21.28■■□□□ 1
VPS53-201ENST00000291074 RAP1GAPP47736 663 aa21.28■■□□□ 1
VPS53-201ENST00000291074 ZNF699Q32M78 642 aa21.28■■□□□ 1
VPS53-201ENST00000291074 ATF7IP2Q5U623 682 aa21.28■■□□□ 1
VPS53-201ENST00000291074 TXNRD3NBQ6F5E7 133 aa21.28■■□□□ 1
VPS53-201ENST00000291074 MPZL3Q6UWV2 235 aa21.28■■□□□ 1
VPS53-201ENST00000291074 ATL2Q8NHH9 583 aa21.28■■□□□ 1
VPS53-201ENST00000291074 PPP1R16BQ96T49 567 aa21.28■■□□□ 1
VPS53-201ENST00000291074 TMEM191CA6NGB0 347 aa21.27■■□□□ 1
VPS53-201ENST00000291074 SRRM3A6NNA2 597 aaPredicted RBP21.27■■□□□ 1
VPS53-201ENST00000291074 F8VP50 259 aa21.27■■□□□ 1
VPS53-201ENST00000291074 SLC25A27O95847 323 aa21.27■■□□□ 1
VPS53-201ENST00000291074 CHN1P15882 459 aa21.27■■□□□ 1
VPS53-201ENST00000291074 ITIH2P19823 946 aa21.27■■□□□ 1
VPS53-201ENST00000291074 ASPAP45381 313 aa21.27■■□□□ 1
VPS53-201ENST00000291074 GRM1Q13255 1194 aa21.27■■□□□ 1
VPS53-201ENST00000291074 KCTD2Q14681 263 aa21.27■■□□□ 1
VPS53-201ENST00000291074 LONRF1Q17RB8 773 aa21.27■■□□□ 1
VPS53-201ENST00000291074 SGSM1Q2NKQ1 1148 aa21.27■■□□□ 1
VPS53-201ENST00000291074 GJC2Q5T442 439 aaPredicted RBP21.27■■□□□ 1
VPS53-201ENST00000291074 WDTC1Q8N5D0 677 aa21.27■■□□□ 1
VPS53-201ENST00000291074 GRK7Q8WTQ7 553 aa21.27■■□□□ 1
VPS53-201ENST00000291074 SCLT1Q96NL6 688 aa21.27■■□□□ 1
VPS53-201ENST00000291074 XYLT2Q9H1B5 865 aa21.27■■□□□ 1
VPS53-201ENST00000291074 NXF1Q9UBU9 619 aaKnown RBP21.27■■□□□ 1
VPS53-201ENST00000291074 IP6K2Q9UHH9 426 aa21.27■■□□□ 1
VPS53-201ENST00000291074 DNAJC25-GNG10A0A024R161 153 aa21.27■■□□□ 1
VPS53-201ENST00000291074 RASGRF2O14827 1237 aa21.27■■□□□ 1
VPS53-201ENST00000291074 PROZP22891 400 aa21.27■■□□□ 1
VPS53-201ENST00000291074 AUHQ13825 339 aaKnown RBP21.27■■□□□ 1
VPS53-201ENST00000291074 DNAJC24Q6P3W2 148 aa21.27■■□□□ 1
VPS53-201ENST00000291074 CCDC62Q6P9F0 684 aa21.27■■□□□ 1
VPS53-201ENST00000291074 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.27■■□□□ 1
VPS53-201ENST00000291074 PLPPR4Q7Z2D5 763 aa21.27■■□□□ 1
VPS53-201ENST00000291074 EXD1Q8NHP7 514 aa21.27■■□□□ 1
VPS53-201ENST00000291074 PTPRHQ9HD43 1115 aa21.27■■□□□ 1
VPS53-201ENST00000291074 NEU2Q9Y3R4 380 aa21.27■■□□□ 1
VPS53-201ENST00000291074 SPDYE5A6NIY4 337 aa21.26■□□□□ 0.99
VPS53-201ENST00000291074 IQCF3P0C7M6 154 aa21.26■□□□□ 0.99
VPS53-201ENST00000291074 CXCL8P10145 99 aa21.26■□□□□ 0.99
VPS53-201ENST00000291074 TXNP10599 105 aaKnown RBP21.26■□□□□ 0.99
VPS53-201ENST00000291074 MAN1A1P33908 653 aa21.26■□□□□ 0.99
VPS53-201ENST00000291074 IGBP1P78318 339 aa21.26■□□□□ 0.99
VPS53-201ENST00000291074 ORC1Q13415 861 aa21.26■□□□□ 0.99
VPS53-201ENST00000291074 C6orf118Q5T5N4 469 aa21.26■□□□□ 0.99
VPS53-201ENST00000291074 EFCAB12Q6NXP0 572 aa21.26■□□□□ 0.99
VPS53-201ENST00000291074 TSPYL1Q9H0U9 437 aa21.26■□□□□ 0.99
VPS53-201ENST00000291074 IVNS1ABPQ9Y6Y0 642 aa21.26■□□□□ 0.99
VPS53-201ENST00000291074 TCRBV5S1A1TA0A578 114 aa21.26■□□□□ 0.99
VPS53-201ENST00000291074 ATF7P17544 494 aaPredicted RBP21.26■□□□□ 0.99
VPS53-201ENST00000291074 NFX1Q12986 1120 aaKnown RBP21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms