RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 SCFD1Q8WVM8 642 aa19.44■□□□□ 0.7
PCDH1-201ENST00000287008 DPF3Q92784 378 aa19.44■□□□□ 0.7
PCDH1-201ENST00000287008 LATS2Q9NRM7 1088 aa19.44■□□□□ 0.7
PCDH1-201ENST00000287008 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.44■□□□□ 0.7
PCDH1-201ENST00000287008 L3MBTL1Q9Y468 752 aa19.44■□□□□ 0.7
PCDH1-201ENST00000287008 NDUFS3O75489 264 aa19.43■□□□□ 0.7
PCDH1-201ENST00000287008 RAG1P15918 1043 aa19.43■□□□□ 0.7
PCDH1-201ENST00000287008 SPATA18Q8TC71 538 aa19.43■□□□□ 0.7
PCDH1-201ENST00000287008 L3MBTL3Q96JM7 780 aaPredicted RBP19.43■□□□□ 0.7
PCDH1-201ENST00000287008 FOPNLQ96NB1 174 aa19.43■□□□□ 0.7
PCDH1-201ENST00000287008 ASCC2Q9H1I8 757 aaPredicted RBP19.43■□□□□ 0.7
PCDH1-201ENST00000287008 PHEXP78562 749 aa19.43■□□□□ 0.7
PCDH1-201ENST00000287008 CAPRIN1Q14444 709 aaKnown RBP19.43■□□□□ 0.7
PCDH1-201ENST00000287008 STAT4Q14765 748 aa19.43■□□□□ 0.7
PCDH1-201ENST00000287008 MFN1Q8IWA4 741 aa19.43■□□□□ 0.7
PCDH1-201ENST00000287008 FEZF2Q8TBJ5 459 aa19.43■□□□□ 0.7
PCDH1-201ENST00000287008 SOCS4Q8WXH5 440 aa19.43■□□□□ 0.7
PCDH1-201ENST00000287008 ERGIC2Q96RQ1 377 aa19.43■□□□□ 0.7
PCDH1-201ENST00000287008 A0A087WZ62 844 aa19.43■□□□□ 0.7
PCDH1-201ENST00000287008 ADGRB1O14514 1584 aa19.43■□□□□ 0.7
PCDH1-201ENST00000287008 CKMP06732 381 aa19.43■□□□□ 0.7
PCDH1-201ENST00000287008 AKR1A1P14550 325 aa19.43■□□□□ 0.7
PCDH1-201ENST00000287008 INSRRP14616 1297 aa19.43■□□□□ 0.7
PCDH1-201ENST00000287008 SLC11A2P49281 568 aa19.43■□□□□ 0.7
PCDH1-201ENST00000287008 PDCLQ13371 301 aa19.43■□□□□ 0.7
PCDH1-201ENST00000287008 ELOA2Q8IYF1 753 aaPredicted RBP19.43■□□□□ 0.7
PCDH1-201ENST00000287008 OSMRQ99650 979 aa19.43■□□□□ 0.7
PCDH1-201ENST00000287008 FDXACB1Q9BRP7 624 aaPredicted RBP19.43■□□□□ 0.7
PCDH1-201ENST00000287008 PCDHGB4Q9UN71 923 aa19.43■□□□□ 0.7
PCDH1-201ENST00000287008 DOLKQ9UPQ8 538 aa19.43■□□□□ 0.7
PCDH1-201ENST00000287008 EPB41L3Q9Y2J2 1087 aaPredicted RBP19.43■□□□□ 0.7
PCDH1-201ENST00000287008 CST8O60676 142 aa19.43■□□□□ 0.7
PCDH1-201ENST00000287008 DIAPH2O60879 1101 aa19.43■□□□□ 0.7
PCDH1-201ENST00000287008 FKBP1AP62942 108 aaKnown RBP19.43■□□□□ 0.7
PCDH1-201ENST00000287008 CDCA5Q96FF9 252 aa19.43■□□□□ 0.7
PCDH1-201ENST00000287008 FHDC1Q9C0D6 1143 aaPredicted RBP19.43■□□□□ 0.7
PCDH1-201ENST00000287008 MTMR12Q9C0I1 747 aa19.43■□□□□ 0.7
PCDH1-201ENST00000287008 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.43■□□□□ 0.7
PCDH1-201ENST00000287008 AK9Q5TCS8 1911 aa19.42■□□□□ 0.7
PCDH1-201ENST00000287008 SPECC1L-ADORA2AF8WAN1 911 aa19.42■□□□□ 0.7
PCDH1-201ENST00000287008 ELAVL2Q12926 359 aaKnown RBP19.42■□□□□ 0.7
PCDH1-201ENST00000287008 SNCBQ16143 134 aa19.42■□□□□ 0.7
PCDH1-201ENST00000287008 GSPT2Q8IYD1 628 aaKnown RBP19.42■□□□□ 0.7
PCDH1-201ENST00000287008 MLXIPLQ9NP71 852 aa19.42■□□□□ 0.7
PCDH1-201ENST00000287008 SENP1Q9P0U3 644 aa19.42■□□□□ 0.7
PCDH1-201ENST00000287008 KCNA2P16389 499 aa19.42■□□□□ 0.7
PCDH1-201ENST00000287008 MAP4P27816 1152 aaKnown RBP19.42■□□□□ 0.7
PCDH1-201ENST00000287008 RPL10AP62906 217 aaKnown RBP19.42■□□□□ 0.7
PCDH1-201ENST00000287008 TBCCQ15814 346 aa19.42■□□□□ 0.7
PCDH1-201ENST00000287008 AMHR2Q16671 573 aa19.42■□□□□ 0.7
PCDH1-201ENST00000287008 MEI1Q5TIA1 1274 aa19.42■□□□□ 0.7
PCDH1-201ENST00000287008 ATP6V0D2Q8N8Y2 350 aa19.42■□□□□ 0.7
PCDH1-201ENST00000287008 VTA1Q9NP79 307 aa19.42■□□□□ 0.7
PCDH1-201ENST00000287008 PAK5Q9P286 719 aa19.42■□□□□ 0.7
PCDH1-201ENST00000287008 ALG6Q9Y672 507 aa19.42■□□□□ 0.7
PCDH1-201ENST00000287008 SLC4A7Q9Y6M7 1214 aa19.42■□□□□ 0.7
PCDH1-201ENST00000287008 CDH18Q13634 790 aa19.42■□□□□ 0.7
PCDH1-201ENST00000287008 Q4G0T1 1027 aa19.42■□□□□ 0.7
PCDH1-201ENST00000287008 HIBCHQ6NVY1 386 aaPredicted RBP19.42■□□□□ 0.7
PCDH1-201ENST00000287008 C1orf131Q8NDD1 294 aaKnown RBP19.42■□□□□ 0.7
PCDH1-201ENST00000287008 MTG1Q9BT17 334 aaPredicted RBP19.42■□□□□ 0.7
PCDH1-201ENST00000287008 AGO4Q9HCK5 861 aaKnown RBP19.42■□□□□ 0.7
PCDH1-201ENST00000287008 SETD4Q9NVD3 440 aa19.42■□□□□ 0.7
PCDH1-201ENST00000287008 GTF3C4Q9UKN8 822 aa19.42■□□□□ 0.7
PCDH1-201ENST00000287008 RALBP11234 206 aa19.41■□□□□ 0.7
PCDH1-201ENST00000287008 COMTP21964 271 aa19.41■□□□□ 0.7
PCDH1-201ENST00000287008 NFE2Q16621 373 aaPredicted RBP19.41■□□□□ 0.7
PCDH1-201ENST00000287008 SPATA17Q96L03 361 aa19.41■□□□□ 0.7
PCDH1-201ENST00000287008 CBWD1Q9BRT8 395 aa19.41■□□□□ 0.7
PCDH1-201ENST00000287008 ZC3H7BQ9UGR2 993 aaKnown RBP19.41■□□□□ 0.7
PCDH1-201ENST00000287008 FBXL5Q9UKA1 691 aa19.41■□□□□ 0.7
PCDH1-201ENST00000287008 CYB561D2O14569 222 aa19.41■□□□□ 0.7
PCDH1-201ENST00000287008 TRPA1O75762 1119 aa19.41■□□□□ 0.7
PCDH1-201ENST00000287008 FOXD4Q12950 439 aaPredicted RBP19.41■□□□□ 0.7
PCDH1-201ENST00000287008 BYSLQ13895 437 aaKnown RBP19.41■□□□□ 0.7
PCDH1-201ENST00000287008 PTPAQ15257 358 aa19.41■□□□□ 0.7
PCDH1-201ENST00000287008 TAF2Q6P1X5 1199 aa19.41■□□□□ 0.7
PCDH1-201ENST00000287008 TMC7Q7Z402 723 aa19.41■□□□□ 0.7
PCDH1-201ENST00000287008 TRIM15Q9C019 465 aa19.41■□□□□ 0.7
PCDH1-201ENST00000287008 CASS4Q9NQ75 786 aa19.41■□□□□ 0.7
PCDH1-201ENST00000287008 DDX4Q9NQI0 724 aaKnown RBP19.41■□□□□ 0.7
PCDH1-201ENST00000287008 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.41■□□□□ 0.7
PCDH1-201ENST00000287008 ATICP31939 592 aa19.41■□□□□ 0.7
PCDH1-201ENST00000287008 CDR2Q01850 454 aa19.41■□□□□ 0.7
PCDH1-201ENST00000287008 SYTL3Q4VX76 610 aa19.41■□□□□ 0.7
PCDH1-201ENST00000287008 TBC1D19Q8N5T2 526 aa19.41■□□□□ 0.7
PCDH1-201ENST00000287008 SHCBP1Q8NEM2 672 aa19.41■□□□□ 0.7
PCDH1-201ENST00000287008 RPRD1AQ96P16 312 aaPredicted RBP19.41■□□□□ 0.7
PCDH1-201ENST00000287008 IRX2Q9BZI1 471 aaPredicted RBP19.41■□□□□ 0.7
PCDH1-201ENST00000287008 REREQ9P2R6 1566 aa19.41■□□□□ 0.7
PCDH1-201ENST00000287008 A0A1W2PQJ5 194 aa19.41■□□□□ 0.7
PCDH1-201ENST00000287008 TLR2O60603 784 aa19.41■□□□□ 0.7
PCDH1-201ENST00000287008 ADORA2AP29274 412 aa19.41■□□□□ 0.7
PCDH1-201ENST00000287008 CTXN3Q4LDR2 81 aa19.41■□□□□ 0.7
PCDH1-201ENST00000287008 ANKMY2Q8IV38 441 aa19.41■□□□□ 0.7
PCDH1-201ENST00000287008 FBXO41Q8TF61 875 aa19.41■□□□□ 0.7
PCDH1-201ENST00000287008 KCNB2Q92953 911 aa19.41■□□□□ 0.7
PCDH1-201ENST00000287008 RBM15Q96T37 977 aaKnown RBP eCLIP19.41■□□□□ 0.7
PCDH1-201ENST00000287008 METTL5Q9NRN9 209 aaKnown RBP19.41■□□□□ 0.7
PCDH1-201ENST00000287008 PXDNQ92626 1479 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms