RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 HOXA11P31270 313 aaPredicted RBP16.29■□□□□ 0.2
SF3B4-201ENST00000271628 SLC7A5Q01650 507 aa16.29■□□□□ 0.2
SF3B4-201ENST00000271628 TMEM62Q0P6H9 643 aa16.29■□□□□ 0.2
SF3B4-201ENST00000271628 TMEM35BQ8NCS4 154 aa16.29■□□□□ 0.2
SF3B4-201ENST00000271628 CD101Q93033 1021 aa16.29■□□□□ 0.2
SF3B4-201ENST00000271628 OSMRQ99650 979 aa16.29■□□□□ 0.2
SF3B4-201ENST00000271628 PLVAPQ9BX97 442 aa16.29■□□□□ 0.2
SF3B4-201ENST00000271628 CYP3A43Q9HB55 503 aa16.29■□□□□ 0.2
SF3B4-201ENST00000271628 CHORDC1Q9UHD1 332 aaPredicted RBP16.29■□□□□ 0.2
SF3B4-201ENST00000271628 PCDHGC3Q9UN70 934 aa16.29■□□□□ 0.2
SF3B4-201ENST00000271628 CEP83Q9Y592 693 aa16.29■□□□□ 0.2
SF3B4-201ENST00000271628 TMEM110-MUSTN1A8MSY1 372 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 MEFVO15553 781 aaPredicted RBP16.28■□□□□ 0.2
SF3B4-201ENST00000271628 MED7O43513 233 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 STAU1O95793 577 aaKnown RBP16.28■□□□□ 0.2
SF3B4-201ENST00000271628 HSPA6P17066 643 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 CTNNA2P26232 953 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 CTNNA1P35221 906 aaKnown RBP16.28■□□□□ 0.2
SF3B4-201ENST00000271628 PEX5P50542 639 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 RBP5P82980 135 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 LACTBP83111 547 aaPredicted RBP16.28■□□□□ 0.2
SF3B4-201ENST00000271628 PURAQ00577 322 aaKnown RBP16.28■□□□□ 0.2
SF3B4-201ENST00000271628 BEX3Q00994 111 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 MFSD14CQ5VZR4 134 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 PASD1Q8IV76 773 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 TTC39CQ8N584 583 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 C7orf31Q8N865 590 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 CCDC26Q8TAB7 109 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 DNAJB3Q8WWF6 145 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 GDAP1L1Q96MZ0 367 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 SLITRK6Q9H5Y7 841 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 PCDHA3Q9Y5H8 950 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 CITO14578 2027 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 GOLGA6L10A0A0M3HER8 536 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 TMEM88BA6NKF7 163 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 TREHO43280 583 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 PAEPP09466 180 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 FGFR4P22455 802 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 PSMC4P43686 418 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 YARSP54577 528 aaKnown RBP16.28■□□□□ 0.2
SF3B4-201ENST00000271628 NNTQ13423 1086 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 ZNF394Q53GI3 561 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 DCAF12L1Q5VU92 463 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 ALS2CLQ60I27 953 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 SCARA5Q6ZMJ2 495 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 RUFY4Q6ZNE9 571 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 MAATS1Q7Z4T9 603 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 KLHL7Q8IXQ5 586 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 GSPT2Q8IYD1 628 aaKnown RBP16.28■□□□□ 0.2
SF3B4-201ENST00000271628 CXorf38Q8TB03 319 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 ALG3Q92685 438 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 CAVIN3Q969G5 261 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 AP1M1Q9BXS5 423 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 DPP3Q9NY33 737 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 LCMT1Q9UIC8 334 aa16.28■□□□□ 0.2
SF3B4-201ENST00000271628 SART1O43290 800 aaKnown RBP16.27■□□□□ 0.2
SF3B4-201ENST00000271628 HEXIM1O94992 359 aaKnown RBP16.27■□□□□ 0.2
SF3B4-201ENST00000271628 NPTXRO95502 500 aa16.27■□□□□ 0.2
SF3B4-201ENST00000271628 CALB1P05937 261 aa16.27■□□□□ 0.2
SF3B4-201ENST00000271628 CFHP08603 1231 aa16.27■□□□□ 0.2
SF3B4-201ENST00000271628 MMP8P22894 467 aa16.27■□□□□ 0.2
SF3B4-201ENST00000271628 IRX5P78411 483 aaPredicted RBP16.27■□□□□ 0.2
SF3B4-201ENST00000271628 SEL1L2Q5TEA6 688 aa16.27■□□□□ 0.2
SF3B4-201ENST00000271628 SND1Q7KZF4 910 aaKnown RBP eCLIP16.27■□□□□ 0.2
SF3B4-201ENST00000271628 SMC1BQ8NDV3 1235 aa16.27■□□□□ 0.2
SF3B4-201ENST00000271628 KIF12Q96FN5 646 aa16.27■□□□□ 0.2
SF3B4-201ENST00000271628 C11orf70Q9BRQ4 267 aa16.27■□□□□ 0.2
SF3B4-201ENST00000271628 TRIM6Q9C030 488 aaPredicted RBP16.27■□□□□ 0.2
SF3B4-201ENST00000271628 CDHR5Q9HBB8 845 aa16.27■□□□□ 0.2
SF3B4-201ENST00000271628 SPC25Q9HBM1 224 aa16.27■□□□□ 0.2
SF3B4-201ENST00000271628 GDF3Q9NR23 364 aa16.27■□□□□ 0.2
SF3B4-201ENST00000271628 PARVAQ9NVD7 372 aa16.27■□□□□ 0.2
SF3B4-201ENST00000271628 PCNTO95613 3336 aa16.26■□□□□ 0.19
SF3B4-201ENST00000271628 GOLGA8KD6RF30 607 aa16.26■□□□□ 0.19
SF3B4-201ENST00000271628 OPA1O60313 960 aa16.26■□□□□ 0.19
SF3B4-201ENST00000271628 CTGFP29279 349 aa16.26■□□□□ 0.19
SF3B4-201ENST00000271628 HOXC8P31273 242 aa16.26■□□□□ 0.19
SF3B4-201ENST00000271628 CDH5P33151 784 aaPredicted RBP16.26■□□□□ 0.19
SF3B4-201ENST00000271628 RWDD2BP57060 319 aa16.26■□□□□ 0.19
SF3B4-201ENST00000271628 GJA9P57773 515 aa16.26■□□□□ 0.19
SF3B4-201ENST00000271628 PLEKHA7Q6IQ23 1121 aa16.26■□□□□ 0.19
SF3B4-201ENST00000271628 LRRC31Q6UY01 552 aa16.26■□□□□ 0.19
SF3B4-201ENST00000271628 FAM76AQ8TAV0 307 aa16.26■□□□□ 0.19
SF3B4-201ENST00000271628 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.26■□□□□ 0.19
SF3B4-201ENST00000271628 KRT35Q92764 455 aa16.26■□□□□ 0.19
SF3B4-201ENST00000271628 ZBTB9Q96C00 473 aa16.26■□□□□ 0.19
SF3B4-201ENST00000271628 HPDLQ96IR7 371 aa16.26■□□□□ 0.19
SF3B4-201ENST00000271628 BTBD6Q96KE9 485 aa16.26■□□□□ 0.19
SF3B4-201ENST00000271628 POLIQ9UNA4 740 aa16.26■□□□□ 0.19
SF3B4-201ENST00000271628 AGAP1Q9UPQ3 857 aa16.26■□□□□ 0.19
SF3B4-201ENST00000271628 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.26■□□□□ 0.19
SF3B4-201ENST00000271628 GOLGA6CA6NDK9 693 aa16.26■□□□□ 0.19
SF3B4-201ENST00000271628 GLI1P08151 1106 aa16.26■□□□□ 0.19
SF3B4-201ENST00000271628 C6orf222P0C671 652 aaPredicted RBP16.26■□□□□ 0.19
SF3B4-201ENST00000271628 GOLGA6DP0CG33 693 aa16.26■□□□□ 0.19
SF3B4-201ENST00000271628 POLR2BP30876 1174 aaKnown RBP16.26■□□□□ 0.19
SF3B4-201ENST00000271628 CRYBB1P53674 252 aaPredicted RBP16.26■□□□□ 0.19
SF3B4-201ENST00000271628 MYO1EQ12965 1108 aa16.26■□□□□ 0.19
SF3B4-201ENST00000271628 PTP4A2Q12974 167 aa16.26■□□□□ 0.19
SF3B4-201ENST00000271628 HIC1Q14526 733 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms