RNA–Protein interactions for RNA: ENST00000216639.7

VRK1-201, Transcript of vaccinia related kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VRK1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-201ENST00000216639 MEFVO15553 781 aaPredicted RBP18.52■□□□□ 0.55
VRK1-201ENST00000216639 RAD51CO43502 376 aa18.52■□□□□ 0.55
VRK1-201ENST00000216639 STAU1O95793 577 aaKnown RBP18.52■□□□□ 0.55
VRK1-201ENST00000216639 CFHP08603 1231 aa18.52■□□□□ 0.55
VRK1-201ENST00000216639 BRD2P25440 801 aaKnown RBP18.52■□□□□ 0.55
VRK1-201ENST00000216639 HOXA11P31270 313 aaPredicted RBP18.52■□□□□ 0.55
VRK1-201ENST00000216639 PEX5P50542 639 aa18.52■□□□□ 0.55
VRK1-201ENST00000216639 RWDD2BP57060 319 aa18.52■□□□□ 0.55
VRK1-201ENST00000216639 MRPS25P82663 173 aaKnown RBP18.52■□□□□ 0.55
VRK1-201ENST00000216639 PAK2Q13177 524 aa18.52■□□□□ 0.55
VRK1-201ENST00000216639 EMBQ6PCB8 327 aa18.52■□□□□ 0.55
VRK1-201ENST00000216639 AENQ8WTP8 325 aaKnown RBP18.52■□□□□ 0.55
VRK1-201ENST00000216639 KRT35Q92764 455 aa18.52■□□□□ 0.55
VRK1-201ENST00000216639 HPDLQ96IR7 371 aa18.52■□□□□ 0.55
VRK1-201ENST00000216639 TRIM6Q9C030 488 aaPredicted RBP18.52■□□□□ 0.55
VRK1-201ENST00000216639 EPB41L5Q9HCM4 733 aa18.52■□□□□ 0.55
VRK1-201ENST00000216639 AGAP1Q9UPQ3 857 aa18.52■□□□□ 0.55
VRK1-201ENST00000216639 SBDSQ9Y3A5 250 aaKnown RBP eCLIP18.52■□□□□ 0.55
VRK1-201ENST00000216639 SART1O43290 800 aaKnown RBP18.51■□□□□ 0.55
VRK1-201ENST00000216639 GLI1P08151 1106 aa18.51■□□□□ 0.55
VRK1-201ENST00000216639 MMP8P22894 467 aa18.51■□□□□ 0.55
VRK1-201ENST00000216639 POLR2BP30876 1174 aaKnown RBP18.51■□□□□ 0.55
VRK1-201ENST00000216639 PURAQ00577 322 aaKnown RBP18.51■□□□□ 0.55
VRK1-201ENST00000216639 ZNF211Q13398 564 aaPredicted RBP18.51■□□□□ 0.55
VRK1-201ENST00000216639 PLEKHA7Q6IQ23 1121 aa18.51■□□□□ 0.55
VRK1-201ENST00000216639 PAXIP1Q6ZW49 1069 aaPredicted RBP18.51■□□□□ 0.55
VRK1-201ENST00000216639 GADD45GIP1Q8TAE8 222 aaPredicted RBP18.51■□□□□ 0.55
VRK1-201ENST00000216639 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.51■□□□□ 0.55
VRK1-201ENST00000216639 SPC25Q9HBM1 224 aa18.51■□□□□ 0.55
VRK1-201ENST00000216639 TMEM88BA6NKF7 163 aa18.5■□□□□ 0.55
VRK1-201ENST00000216639 TREHO43280 583 aa18.5■□□□□ 0.55
VRK1-201ENST00000216639 C6orf222P0C671 652 aaPredicted RBP18.5■□□□□ 0.55
VRK1-201ENST00000216639 MYBL2P10244 700 aa18.5■□□□□ 0.55
VRK1-201ENST00000216639 CD19P15391 556 aa18.5■□□□□ 0.55
VRK1-201ENST00000216639 SSTR3P32745 418 aaPredicted RBP18.5■□□□□ 0.55
VRK1-201ENST00000216639 CDH5P33151 784 aaPredicted RBP18.5■□□□□ 0.55
VRK1-201ENST00000216639 PSMC4P43686 418 aa18.5■□□□□ 0.55
VRK1-201ENST00000216639 IRX5P78411 483 aaPredicted RBP18.5■□□□□ 0.55
VRK1-201ENST00000216639 MYO1EQ12965 1108 aa18.5■□□□□ 0.55
VRK1-201ENST00000216639 MAMLD1Q13495 774 aa18.5■□□□□ 0.55
VRK1-201ENST00000216639 SMC1AQ14683 1233 aaKnown RBP18.5■□□□□ 0.55
VRK1-201ENST00000216639 EIF1ADQ8N9N8 165 aaKnown RBP18.5■□□□□ 0.55
VRK1-201ENST00000216639 SMC1BQ8NDV3 1235 aa18.5■□□□□ 0.55
VRK1-201ENST00000216639 CXorf38Q8TB03 319 aa18.5■□□□□ 0.55
VRK1-201ENST00000216639 DDX47Q9H0S4 455 aaKnown RBP18.5■□□□□ 0.55
VRK1-201ENST00000216639 CDHR5Q9HBB8 845 aa18.5■□□□□ 0.55
VRK1-201ENST00000216639 MGAMO43451 1857 aa18.5■□□□□ 0.55
VRK1-201ENST00000216639 ITGA4P13612 1032 aa18.49■□□□□ 0.55
VRK1-201ENST00000216639 CRYBB1P53674 252 aaPredicted RBP18.49■□□□□ 0.55
VRK1-201ENST00000216639 PTP4A2Q12974 167 aa18.49■□□□□ 0.55
VRK1-201ENST00000216639 SNX17Q15036 470 aa18.49■□□□□ 0.55
VRK1-201ENST00000216639 TAF2Q6P1X5 1199 aa18.49■□□□□ 0.55
VRK1-201ENST00000216639 GSPT2Q8IYD1 628 aaKnown RBP18.49■□□□□ 0.55
VRK1-201ENST00000216639 HINFPQ9BQA5 517 aa18.49■□□□□ 0.55
VRK1-201ENST00000216639 MTG1Q9BT17 334 aaPredicted RBP18.49■□□□□ 0.55
VRK1-201ENST00000216639 LHX5Q9H2C1 402 aa18.49■□□□□ 0.55
VRK1-201ENST00000216639 SNTG2Q9NY99 539 aa18.49■□□□□ 0.55
VRK1-201ENST00000216639 MTUS1Q9ULD2 1270 aa18.49■□□□□ 0.55
VRK1-201ENST00000216639 STRIP2Q9ULQ0 834 aa18.49■□□□□ 0.55
VRK1-201ENST00000216639 TLR3O15455 904 aaKnown RBP18.49■□□□□ 0.55
VRK1-201ENST00000216639 PROSCO94903 275 aa18.49■□□□□ 0.55
VRK1-201ENST00000216639 CTGFP29279 349 aa18.49■□□□□ 0.55
VRK1-201ENST00000216639 RAP1GAPP47736 663 aa18.49■□□□□ 0.55
VRK1-201ENST00000216639 MARCKSL1P49006 195 aa18.49■□□□□ 0.55
VRK1-201ENST00000216639 GJA9P57773 515 aa18.49■□□□□ 0.55
VRK1-201ENST00000216639 TAP1Q03518 808 aa18.49■□□□□ 0.55
VRK1-201ENST00000216639 NNTQ13423 1086 aa18.49■□□□□ 0.55
VRK1-201ENST00000216639 CUL1Q13616 776 aa18.49■□□□□ 0.55
VRK1-201ENST00000216639 HIC1Q14526 733 aa18.49■□□□□ 0.55
VRK1-201ENST00000216639 PHLDB2Q86SQ0 1253 aa18.49■□□□□ 0.55
VRK1-201ENST00000216639 ERICH1Q86X53 443 aa18.49■□□□□ 0.55
VRK1-201ENST00000216639 C1orf131Q8NDD1 294 aaKnown RBP18.49■□□□□ 0.55
VRK1-201ENST00000216639 FEZF2Q8TBJ5 459 aa18.49■□□□□ 0.55
VRK1-201ENST00000216639 PPP1R13LQ8WUF5 828 aa18.49■□□□□ 0.55
VRK1-201ENST00000216639 IFT81Q8WYA0 676 aa18.49■□□□□ 0.55
VRK1-201ENST00000216639 SNX27Q96L92 541 aa18.49■□□□□ 0.55
VRK1-201ENST00000216639 CILPO75339 1184 aa18.48■□□□□ 0.55
VRK1-201ENST00000216639 CYBAP13498 195 aa18.48■□□□□ 0.55
VRK1-201ENST00000216639 HOXC8P31273 242 aa18.48■□□□□ 0.55
VRK1-201ENST00000216639 RAD23BP54727 409 aa18.48■□□□□ 0.55
VRK1-201ENST00000216639 CDH8P55286 799 aa18.48■□□□□ 0.55
VRK1-201ENST00000216639 C2CD6Q53TS8 623 aa18.48■□□□□ 0.55
VRK1-201ENST00000216639 GNASQ5JWF2 1037 aa18.48■□□□□ 0.55
VRK1-201ENST00000216639 SND1Q7KZF4 910 aaKnown RBP eCLIP18.48■□□□□ 0.55
VRK1-201ENST00000216639 BEST2Q8NFU1 509 aa18.48■□□□□ 0.55
VRK1-201ENST00000216639 TFAP2BQ92481 460 aa18.48■□□□□ 0.55
VRK1-201ENST00000216639 TMEM176AQ96HP8 235 aa18.48■□□□□ 0.55
VRK1-201ENST00000216639 TSPAN18Q96SJ8 248 aa18.48■□□□□ 0.55
VRK1-201ENST00000216639 UBXN6Q9BZV1 441 aa18.48■□□□□ 0.55
VRK1-201ENST00000216639 SMYD3Q9H7B4 428 aa18.48■□□□□ 0.55
VRK1-201ENST00000216639 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.48■□□□□ 0.55
VRK1-201ENST00000216639 IP6K2Q9UHH9 426 aa18.48■□□□□ 0.55
VRK1-201ENST00000216639 PIN4Q9Y237 131 aaKnown RBP18.48■□□□□ 0.55
VRK1-201ENST00000216639 M0QZ92 97 aa18.47■□□□□ 0.55
VRK1-201ENST00000216639 PYGMP11217 842 aa18.47■□□□□ 0.55
VRK1-201ENST00000216639 MAN1A1P33908 653 aa18.47■□□□□ 0.55
VRK1-201ENST00000216639 ZNF200P98182 395 aaPredicted RBP18.47■□□□□ 0.55
VRK1-201ENST00000216639 PTPN11Q06124 597 aaPredicted RBP18.47■□□□□ 0.55
VRK1-201ENST00000216639 HSP90B2PQ58FF3 399 aa18.47■□□□□ 0.55
VRK1-201ENST00000216639 DNAJC24Q6P3W2 148 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms