RNA–Protein interactions for RNA: YPL065W

VPS28, Transcript of Component of the ESCRT-I complex, yeastyeast

Gene VPS28, Length 729 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS28YPL065W YPK2P18961 677 aa2.52□□□□□ -2.01
VPS28YPL065W MDH2P22133 377 aa2.52□□□□□ -2.01
VPS28YPL065W MAG1P22134 296 aaKnown RBP2.52□□□□□ -2.01
VPS28YPL065W HMF1P40037 129 aaKnown RBP2.52□□□□□ -2.01
VPS28YPL065W YNL217WP40152 326 aa2.52□□□□□ -2.01
VPS28YPL065W BAT2P47176 376 aaKnown RBP2.52□□□□□ -2.01
VPS28YPL065W MMS2P53152 137 aa2.52□□□□□ -2.01
VPS28YPL065W PDR18P53756 1333 aa2.51□□□□□ -2.01
VPS28YPL065W YET1P35723 206 aa2.51□□□□□ -2.01
VPS28YPL065W VTC1P40046 129 aaRIP-Chip data2.51□□□□□ -2.01not detected
VPS28YPL065W SML1Q04964 104 aa2.51□□□□□ -2.01
VPS28YPL065W IKI3Q06706 1349 aaKnown RBP2.5□□□□□ -2.01
VPS28YPL065W ATP15P21306 62 aa2.5□□□□□ -2.01
VPS28YPL065W FZF1P32805 299 aa2.5□□□□□ -2.01
VPS28YPL065W YFR054CP43622 192 aa2.5□□□□□ -2.01
VPS28YPL065W YDR274CP87283 123 aa2.5□□□□□ -2.01
VPS28YPL065W SIR2P06700 562 aa2.49□□□□□ -2.01
VPS28YPL065W MRS1P07266 363 aa2.49□□□□□ -2.01
VPS28YPL065W SNC2P33328 115 aa2.49□□□□□ -2.01
VPS28YPL065W CPA1P07258 411 aaKnown RBP2.48□□□□□ -2.01
VPS28YPL065W GPM2Q12008 311 aa2.48□□□□□ -2.01
VPS28YPL065W FSF1Q12029 327 aaKnown RBP2.48□□□□□ -2.01
VPS28YPL065W BEM2P39960 2167 aaKnown RBP2.47□□□□□ -2.01
VPS28YPL065W CKS1P20486 150 aaKnown RBP2.47□□□□□ -2.01
VPS28YPL065W ERG10P41338 398 aaKnown RBP2.47□□□□□ -2.01
VPS28YPL065W ADE1P27616 306 aa2.46□□□□□ -2.02
VPS28YPL065W YBR219CP38317 127 aa2.46□□□□□ -2.02
VPS28YPL065W GAA1P39012 614 aa2.46□□□□□ -2.02
VPS28YPL065W AVT2P39981 480 aa2.46□□□□□ -2.02
VPS28YPL065W GLE2P40066 365 aa2.46□□□□□ -2.02
VPS28YPL065W BUD25P85052 153 aa2.46□□□□□ -2.02
VPS28YPL065W FLO9P39712 1322 aa2.45□□□□□ -2.02
VPS28YPL065W ASF2P32448 525 aaPredicted RBP2.45□□□□□ -2.02
VPS28YPL065W YBR285WP38354 144 aa2.45□□□□□ -2.02
VPS28YPL065W HNT1Q04344 158 aaKnown RBP2.45□□□□□ -2.02
VPS28YPL065W MBF1O14467 151 aaKnown RBP2.44□□□□□ -2.02
VPS28YPL065W CNB1P25296 175 aa2.44□□□□□ -2.02
VPS28YPL065W IGO2Q9P305 131 aa2.44□□□□□ -2.02
VPS28YPL065W GIM3P53900 129 aa2.43□□□□□ -2.02
VPS28YPL065W MET5P47169 1442 aa2.42□□□□□ -2.02
VPS28YPL065W OCH1P31755 480 aa2.42□□□□□ -2.02
VPS28YPL065W OPY1P38271 328 aa2.42□□□□□ -2.02
VPS28YPL065W ARO80Q04052 950 aa2.42□□□□□ -2.02
VPS28YPL065W ATG40Q99325 256 aa2.42□□□□□ -2.02
VPS28YPL065W ARP3P47117 449 aaKnown RBP2.41□□□□□ -2.02
VPS28YPL065W CSI2Q08054 341 aa2.41□□□□□ -2.02
VPS28YPL065W YKR045CP36138 183 aa2.4□□□□□ -2.03
VPS28YPL065W YER135CP40082 130 aa2.4□□□□□ -2.03
VPS28YPL065W SAY1P53324 424 aa2.4□□□□□ -2.03
VPS28YPL065W YNL184CP53876 108 aa2.4□□□□□ -2.03
VPS28YPL065W FUS2Q05670 677 aa2.4□□□□□ -2.03
VPS28YPL065W YLR162WQ06235 118 aa2.4□□□□□ -2.03
VPS28YPL065W YLR236CA0A023PZG4 107 aa2.39□□□□□ -2.03
VPS28YPL065W YCR090CP25654 182 aaKnown RBP2.39□□□□□ -2.03
VPS28YPL065W KDX1P36005 433 aa2.39□□□□□ -2.03
VPS28YPL065W YBR209WP38311 105 aa2.39□□□□□ -2.03
VPS28YPL065W UBC12P52491 188 aa2.39□□□□□ -2.03
VPS28YPL065W MPC3P53311 146 aa2.39□□□□□ -2.03
VPS28YPL065W POR1P04840 283 aaKnown RBP2.38□□□□□ -2.03
VPS28YPL065W SHE2P36068 246 aaKnown RBP RIP-Chip data2.38□□□□□ -2.03not detected
VPS28YPL065W PAN3P36102 679 aaPredicted RBP2.38□□□□□ -2.03
VPS28YPL065W YEA4P40004 342 aa2.38□□□□□ -2.03
VPS28YPL065W PDS1P40316 373 aaPredicted RBP2.38□□□□□ -2.03
VPS28YPL065W ERJ5P43613 295 aaPredicted RBP2.38□□□□□ -2.03
VPS28YPL065W YJR111CP47148 283 aaKnown RBP2.38□□□□□ -2.03
VPS28YPL065W ARO8P53090 500 aaKnown RBP2.38□□□□□ -2.03
VPS28YPL065W POP3P53833 195 aaPredicted RBP2.38□□□□□ -2.03
VPS28YPL065W ANT1Q06497 328 aa2.38□□□□□ -2.03
VPS28YPL065W YOL024WQ08172 172 aa2.38□□□□□ -2.03
VPS28YPL065W DGA1Q08650 418 aa2.38□□□□□ -2.03
VPS28YPL065W RIO1Q12196 484 aaKnown RBP2.38□□□□□ -2.03
VPS28YPL065W YOL162WP0CF19 215 aa2.37□□□□□ -2.03
VPS28YPL065W TAH1P25638 111 aaPredicted RBP2.37□□□□□ -2.03
VPS28YPL065W SER2P42941 309 aa2.37□□□□□ -2.03
VPS28YPL065W SKI6P46948 246 aaPredicted RBP2.37□□□□□ -2.03
VPS28YPL065W KNH1P50112 268 aa2.37□□□□□ -2.03
VPS28YPL065W ATG38Q05789 226 aaKnown RBP2.37□□□□□ -2.03
VPS28YPL065W NOC4Q06512 552 aaPredicted RBP2.37□□□□□ -2.03
VPS28YPL065W YOL014WQ08110 124 aa2.37□□□□□ -2.03
VPS28YPL065W ODC2Q99297 307 aa2.37□□□□□ -2.03
VPS28YPL065W TFC1P32367 649 aa2.36□□□□□ -2.03
VPS28YPL065W VMA22P38784 181 aa2.36□□□□□ -2.03
VPS28YPL065W AIM2P39721 246 aa2.36□□□□□ -2.03
VPS28YPL065W HOP2P53187 214 aa2.36□□□□□ -2.03
VPS28YPL065W RTC4P53850 401 aa2.36□□□□□ -2.03
VPS28YPL065W GRE1Q08969 168 aa2.36□□□□□ -2.03
VPS28YPL065W SPO13P23624 291 aa2.35□□□□□ -2.03
VPS28YPL065W TMA19P35691 167 aaKnown RBP2.35□□□□□ -2.03
VPS28YPL065W CAF4P36130 643 aa2.35□□□□□ -2.03
VPS28YPL065W YMR099CQ03161 297 aaKnown RBP2.35□□□□□ -2.03
VPS28YPL065W GRX8Q05926 109 aa2.35□□□□□ -2.03
VPS28YPL065W RAD28Q12021 506 aa2.35□□□□□ -2.03
VPS28YPL065W TRX3P25372 127 aa2.34□□□□□ -2.03
VPS28YPL065W TVP23P38962 199 aa2.34□□□□□ -2.03
VPS28YPL065W NUP49Q02199 472 aa2.34□□□□□ -2.03
VPS28YPL065W SNO1Q03144 224 aa2.34□□□□□ -2.03
VPS28YPL065W CHD1P32657 1468 aa2.33□□□□□ -2.04
VPS28YPL065W SNF4P12904 322 aa2.33□□□□□ -2.04
VPS28YPL065W YGL010WP25338 174 aa2.33□□□□□ -2.04
VPS28YPL065W ATP7P30902 174 aa2.33□□□□□ -2.04
Retrieved 100 of 5,963 RNA–protein pairs in 66.9 ms