RNA–Protein interactions for RNA: YFL003C

MSH4, Transcript of Protein involved in meiotic recombination, yeast

Gene MSH4, Length 2,637 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MSH4	YFL003C	YOR283W	Q12040	230 aa	Known RBP	2.25	□□□□□ -2.05
MSH4	YFL003C	YLR462W	O13556	202 aa		2.25	□□□□□ -2.05
MSH4	YFL003C	ARO7	P32178	256 aa		2.25	□□□□□ -2.05
MSH4	YFL003C	DER1	P38307	211 aa		2.25	□□□□□ -2.05
MSH4	YFL003C	ECM34	P38728	170 aa		2.25	□□□□□ -2.05
MSH4	YFL003C	YEL075C	P39972	122 aa		2.25	□□□□□ -2.05
MSH4	YFL003C	YER076C	P40049	302 aa		2.25	□□□□□ -2.05
MSH4	YFL003C	YNL184C	P53876	108 aa		2.25	□□□□□ -2.05
MSH4	YFL003C	NSL1	Q12143	216 aa		2.25	□□□□□ -2.05
MSH4	YFL003C	MDM32	Q12171	622 aa		2.25	□□□□□ -2.05
MSH4	YFL003C	YPL247C	Q12523	523 aa		2.25	□□□□□ -2.05
MSH4	YFL003C	YDL085C-A	Q3E7B7	68 aa	Known RBP	2.25	□□□□□ -2.05
MSH4	YFL003C	FLO1	P32768	1537 aa		2.25	□□□□□ -2.05
MSH4	YFL003C	CCH1	P50077	2039 aa		2.24	□□□□□ -2.05
MSH4	YFL003C	DPM1	P14020	267 aa	Known RBP	2.24	□□□□□ -2.05
MSH4	YFL003C	TRM7	P38238	310 aa	Known RBP	2.24	□□□□□ -2.05
MSH4	YFL003C	BDH1	P39714	382 aa		2.24	□□□□□ -2.05
MSH4	YFL003C	RPA43	P46669	326 aa		2.24	□□□□□ -2.05
MSH4	YFL003C	YGR050C	P53231	118 aa		2.24	□□□□□ -2.05
MSH4	YFL003C	SMD1	Q02260	146 aa	Predicted RBP	2.24	□□□□□ -2.05
MSH4	YFL003C	ABF2	Q02486	183 aa		2.24	□□□□□ -2.05
MSH4	YFL003C	YLR179C	Q06252	201 aa	Known RBP	2.24	□□□□□ -2.05
MSH4	YFL003C	YDR034W-B	Q6Q5X2	51 aa		2.24	□□□□□ -2.05
MSH4	YFL003C	HTL1	Q9URQ5	78 aa		2.24	□□□□□ -2.05
MSH4	YFL003C	CDC7	P06243	507 aa		2.24	□□□□□ -2.05
MSH4	YFL003C	SEC22	P22214	214 aa		2.24	□□□□□ -2.05
MSH4	YFL003C	TRX3	P25372	127 aa		2.24	□□□□□ -2.05
MSH4	YFL003C	LSM1	P47017	172 aa	Known RBP	2.24	□□□□□ -2.05
MSH4	YFL003C	GRH1	Q04410	372 aa	Known RBP	2.24	□□□□□ -2.05
MSH4	YFL003C	YLR030W	Q07967	263 aa		2.24	□□□□□ -2.05
MSH4	YFL003C	BRX1	Q08235	291 aa	Known RBP	2.24	□□□□□ -2.05
MSH4	YFL003C	YOL160W	Q08321	113 aa		2.24	□□□□□ -2.05
MSH4	YFL003C	YPL264C	Q08980	353 aa		2.24	□□□□□ -2.05
MSH4	YFL003C	RPL25	P04456	142 aa	Known RBP	2.23	□□□□□ -2.05
MSH4	YFL003C	TOM40	P23644	387 aa	Known RBP	2.23	□□□□□ -2.05
MSH4	YFL003C	BMH1	P29311	267 aa	Known RBP	2.23	□□□□□ -2.05
MSH4	YFL003C	KDX1	P36005	433 aa		2.23	□□□□□ -2.05
MSH4	YFL003C	DOG2	P38773	246 aa		2.23	□□□□□ -2.05
MSH4	YFL003C	RPF1	P38805	295 aa	Known RBP	2.23	□□□□□ -2.05
MSH4	YFL003C	SPL2	P38839	148 aa		2.23	□□□□□ -2.05
MSH4	YFL003C	EDC3	P39998	551 aa	Known RBP	2.23	□□□□□ -2.05
MSH4	YFL003C	IRC22	P40006	225 aa		2.23	□□□□□ -2.05
MSH4	YFL003C	YGL235W	P53071	178 aa		2.23	□□□□□ -2.05
MSH4	YFL003C	COG5	P53951	403 aa		2.23	□□□□□ -2.05
MSH4	YFL003C	YNL010W	P53981	241 aa	Known RBP	2.23	□□□□□ -2.05
MSH4	YFL003C	YDC1	Q02896	317 aa		2.23	□□□□□ -2.05
MSH4	YFL003C	YOL019W	Q08157	551 aa		2.23	□□□□□ -2.05
MSH4	YFL003C	YHR214C-E	Q8TGK0	99 aa		2.23	□□□□□ -2.05
MSH4	YFL003C	SFC1	P33303	322 aa		2.23	□□□□□ -2.05
MSH4	YFL003C	MSA2	P36157	363 aa		2.23	□□□□□ -2.05
MSH4	YFL003C	COQ5	P49017	307 aa		2.23	□□□□□ -2.05
MSH4	YFL003C	MDM34	P53083	459 aa		2.23	□□□□□ -2.05
MSH4	YFL003C	AUS1	Q08409	1394 aa		2.23	□□□□□ -2.05
MSH4	YFL003C	SLD7	Q08457	257 aa		2.23	□□□□□ -2.05
MSH4	YFL003C	NIP7	Q08962	181 aa	Known RBP	2.23	□□□□□ -2.05
MSH4	YFL003C	YLR053C	Q12026	108 aa		2.23	□□□□□ -2.05
MSH4	YFL003C	ISD11	Q6Q560	94 aa		2.23	□□□□□ -2.05
MSH4	YFL003C	YCR090C	P25654	182 aa	Known RBP	2.22	□□□□□ -2.05
MSH4	YFL003C	ERG24	P32462	438 aa	Known RBP	2.22	□□□□□ -2.05
MSH4	YFL003C	PTM1	P32857	523 aa		2.22	□□□□□ -2.05
MSH4	YFL003C	SRP102	P36057	244 aa	Predicted RBP	2.22	□□□□□ -2.05
MSH4	YFL003C	NVJ1	P38881	321 aa		2.22	□□□□□ -2.05
MSH4	YFL003C	LSM4	P40070	187 aa	Known RBP	2.22	□□□□□ -2.05
MSH4	YFL003C	PST1	Q12355	444 aa		2.22	□□□□□ -2.05
MSH4	YFL003C	RDI1	Q12434	202 aa		2.22	□□□□□ -2.05
MSH4	YFL003C	NOT5	Q12514	560 aa	Predicted RBP	2.22	□□□□□ -2.05
MSH4	YFL003C	PET20	Q99373	253 aa		2.22	□□□□□ -2.05
MSH4	YFL003C	YEL009C-A	A0A023PZF2	135 aa		2.22	□□□□□ -2.05
MSH4	YFL003C	CUP2	P15315	225 aa		2.22	□□□□□ -2.05
MSH4	YFL003C	CNB1	P25296	175 aa		2.22	□□□□□ -2.05
MSH4	YFL003C	HMF1	P40037	129 aa	Known RBP	2.22	□□□□□ -2.05
MSH4	YFL003C	FMP32	P43557	207 aa		2.22	□□□□□ -2.05
MSH4	YFL003C	FLC3	P53121	802 aa		2.22	□□□□□ -2.05
MSH4	YFL003C	YPL257W	Q08974	193 aa		2.22	□□□□□ -2.05
MSH4	YFL003C	PRR2	Q12310	699 aa		2.22	□□□□□ -2.05
MSH4	YFL003C	YOR020W-A	Q3E824	90 aa		2.22	□□□□□ -2.05
MSH4	YFL003C	TOR1	P35169	2470 aa		2.22	□□□□□ -2.05
MSH4	YFL003C	SIR2	P06700	562 aa		2.21	□□□□□ -2.05
MSH4	YFL003C	FCY2	P17064	533 aa		2.21	□□□□□ -2.05
MSH4	YFL003C	MAG1	P22134	296 aa	Known RBP	2.21	□□□□□ -2.05
MSH4	YFL003C	RNP1	P32385	249 aa		2.21	□□□□□ -2.05
MSH4	YFL003C	RMD6	P39975	231 aa		2.21	□□□□□ -2.05
MSH4	YFL003C	RSM27	P53305	110 aa		2.21	□□□□□ -2.05
MSH4	YFL003C	HST4	P53688	370 aa		2.21	□□□□□ -2.05
MSH4	YFL003C	YMD8	Q03697	442 aa		2.21	□□□□□ -2.05
MSH4	YFL003C	LPP1	Q04396	274 aa		2.21	□□□□□ -2.05
MSH4	YFL003C	YDL012C	Q12489	107 aa		2.21	□□□□□ -2.05
MSH4	YFL003C	TDA8	Q6B2U8	126 aa		2.21	□□□□□ -2.05
MSH4	YFL003C	RPS28B	P0C0X0	67 aa	Known RBP	2.21	□□□□□ -2.06
MSH4	YFL003C	SNF4	P12904	322 aa		2.21	□□□□□ -2.06
MSH4	YFL003C	AHC2	P25649	128 aa		2.21	□□□□□ -2.06
MSH4	YFL003C	YFH7	P43591	353 aa		2.21	□□□□□ -2.06
MSH4	YFL003C	SBH2	P52871	88 aa		2.21	□□□□□ -2.06
MSH4	YFL003C	NQM1	P53228	333 aa	Predicted RBP	2.21	□□□□□ -2.06
MSH4	YFL003C	ARR2	Q06597	130 aa		2.21	□□□□□ -2.06
MSH4	YFL003C	RPS28A	Q3E7X9	67 aa	Predicted RBP	2.21	□□□□□ -2.06
MSH4	YFL003C	UBR2	Q07963	1872 aa		2.21	□□□□□ -2.06
MSH4	YFL003C	SGA1	P08019	549 aa		2.21	□□□□□ -2.06
MSH4	YFL003C	DSF1	P0CX08	502 aa		2.21	□□□□□ -2.06
MSH4	YFL003C	YNR073C	P0CX09	502 aa		2.21	□□□□□ -2.06

Retrieved 100 of 5,963 RNA–protein pairs in 29.7 ms