RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 DSTYKQ6XUX3 929 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 C3orf58Q8NDZ4 430 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 NEK11Q8NG66 645 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 MRFAP1L1Q96HT8 127 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 LSM14BQ9BX40 385 aaKnown RBP15.78■□□□□ 0.12
CD48-203ENST00000613788 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.78■□□□□ 0.12
CD48-203ENST00000613788 GDAP2Q9NXN4 497 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 NXF1Q9UBU9 619 aaKnown RBP15.78■□□□□ 0.12
CD48-203ENST00000613788 SIK3Q9Y2K2 1263 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 CEP290O15078 2479 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 SPTLC1O15269 473 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 HUS1O60921 280 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 LRRN2O75325 713 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 CA3P07451 260 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 MYOGP15173 224 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 BMPR1AP36894 532 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 PBX1P40424 430 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 PBX3P40426 434 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 AARSP49588 968 aaKnown RBP eCLIP15.78■□□□□ 0.12
CD48-203ENST00000613788 KRT17Q04695 432 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 LRMPQ12912 555 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 SPOPLQ6IQ16 392 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 DPH6Q7L8W6 267 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 SLC39A11Q8N1S5 342 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 HASPINQ8TF76 798 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 TATDN2Q93075 761 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 TMEM169Q96HH4 297 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 IGSF21Q96ID5 467 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 SUSD3Q96L08 255 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 SENP8Q96LD8 212 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 SAMD11Q96NU1 681 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 MMS19Q96T76 1030 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 NUP58Q9BVL2 599 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 PBX4Q9BYU1 374 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 NIF3L1Q9GZT8 377 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 APEX2Q9UBZ4 518 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 STK39Q9UEW8 545 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 DAAM1Q9Y4D1 1078 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 SNX9Q9Y5X1 595 aa15.78■□□□□ 0.12
CD48-203ENST00000613788 SF3B1O75533 1304 aaKnown RBP eCLIP15.77■□□□□ 0.11
CD48-203ENST00000613788 CYB561D2O14569 222 aa15.77■□□□□ 0.11
CD48-203ENST00000613788 ADCY5O95622 1261 aa15.77■□□□□ 0.11
CD48-203ENST00000613788 FAM163BP0C2L3 166 aa15.77■□□□□ 0.11
CD48-203ENST00000613788 RFX1P22670 979 aa15.77■□□□□ 0.11
CD48-203ENST00000613788 TBXAS1P24557 533 aaPredicted RBP15.77■□□□□ 0.11
CD48-203ENST00000613788 SMAD3P84022 425 aaKnown RBP15.77■□□□□ 0.11
CD48-203ENST00000613788 GCNT1Q02742 428 aa15.77■□□□□ 0.11
CD48-203ENST00000613788 TIGD5Q53EQ6 642 aa15.77■□□□□ 0.11
CD48-203ENST00000613788 KLHDC7AQ5VTJ3 777 aa15.77■□□□□ 0.11
CD48-203ENST00000613788 PHLDB3Q6NSJ2 640 aa15.77■□□□□ 0.11
CD48-203ENST00000613788 CD300LGQ6UXG3 332 aa15.77■□□□□ 0.11
CD48-203ENST00000613788 ENOSF1Q7L5Y1 443 aa15.77■□□□□ 0.11
CD48-203ENST00000613788 PPM1KQ8N3J5 372 aa15.77■□□□□ 0.11
CD48-203ENST00000613788 APPL2Q8NEU8 664 aa15.77■□□□□ 0.11
CD48-203ENST00000613788 IQCDQ96DY2 449 aa15.77■□□□□ 0.11
CD48-203ENST00000613788 PLVAPQ9BX97 442 aa15.77■□□□□ 0.11
CD48-203ENST00000613788 APOBEC3GQ9HC16 384 aaKnown RBP15.77■□□□□ 0.11
CD48-203ENST00000613788 UBE2TQ9NPD8 197 aaPredicted RBP15.77■□□□□ 0.11
CD48-203ENST00000613788 FAM207AQ9NSI2 230 aaPredicted RBP15.77■□□□□ 0.11
CD48-203ENST00000613788 MARCH5Q9NX47 278 aa15.77■□□□□ 0.11
CD48-203ENST00000613788 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.77■□□□□ 0.11
CD48-203ENST00000613788 ITIH6Q6UXX5 1313 aa15.76■□□□□ 0.11
CD48-203ENST00000613788 F8W810 466 aa15.76■□□□□ 0.11
CD48-203ENST00000613788 M0QZQ0 153 aa15.76■□□□□ 0.11
CD48-203ENST00000613788 ITGB1P05556 798 aa15.76■□□□□ 0.11
CD48-203ENST00000613788 RB1P06400 928 aa15.76■□□□□ 0.11
CD48-203ENST00000613788 LINC00271P0C7V0 271 aa15.76■□□□□ 0.11
CD48-203ENST00000613788 ODC1P11926 461 aa15.76■□□□□ 0.11
CD48-203ENST00000613788 TRIM21P19474 475 aaKnown RBP15.76■□□□□ 0.11
CD48-203ENST00000613788 IGFBP6P24592 240 aaPredicted RBP15.76■□□□□ 0.11
CD48-203ENST00000613788 CTNNB1P35222 781 aa15.76■□□□□ 0.11
CD48-203ENST00000613788 PBX2P40425 430 aa15.76■□□□□ 0.11
CD48-203ENST00000613788 BRCC3P46736 316 aa15.76■□□□□ 0.11
CD48-203ENST00000613788 KLK7P49862 253 aa15.76■□□□□ 0.11
CD48-203ENST00000613788 MFAP3P55082 362 aa15.76■□□□□ 0.11
CD48-203ENST00000613788 SPECC1LQ69YQ0 1117 aa15.76■□□□□ 0.11
CD48-203ENST00000613788 FUT10Q6P4F1 479 aa15.76■□□□□ 0.11
CD48-203ENST00000613788 VSTM4Q8IW00 320 aa15.76■□□□□ 0.11
CD48-203ENST00000613788 TOP6BLQ8N6T0 577 aa15.76■□□□□ 0.11
CD48-203ENST00000613788 ANP32BQ92688 251 aaKnown RBP15.76■□□□□ 0.11
CD48-203ENST00000613788 JAKMIP2Q96AA8 810 aa15.76■□□□□ 0.11
CD48-203ENST00000613788 ELMO3Q96BJ8 720 aa15.76■□□□□ 0.11
CD48-203ENST00000613788 TGS1Q96RS0 853 aaKnown RBP15.76■□□□□ 0.11
CD48-203ENST00000613788 FAM124BQ9H5Z6 455 aaPredicted RBP15.76■□□□□ 0.11
CD48-203ENST00000613788 SLC28A3Q9HAS3 691 aa15.76■□□□□ 0.11
CD48-203ENST00000613788 CYP3A43Q9HB55 503 aa15.76■□□□□ 0.11
CD48-203ENST00000613788 SIX2Q9NPC8 291 aa15.76■□□□□ 0.11
CD48-203ENST00000613788 FBXL5Q9UKA1 691 aa15.76■□□□□ 0.11
CD48-203ENST00000613788 DSEQ9UL01 958 aa15.76■□□□□ 0.11
CD48-203ENST00000613788 YBX2Q9Y2T7 364 aaKnown RBP15.76■□□□□ 0.11
CD48-203ENST00000613788 PDE4DIPQ5VU43 2346 aa15.75■□□□□ 0.11
CD48-203ENST00000613788 UCHL3P15374 230 aa15.75■□□□□ 0.11
CD48-203ENST00000613788 YWHAEP62258 255 aaKnown RBP15.75■□□□□ 0.11
CD48-203ENST00000613788 PLCB3Q01970 1234 aa15.75■□□□□ 0.11
CD48-203ENST00000613788 CUL2Q13617 745 aa15.75■□□□□ 0.11
CD48-203ENST00000613788 PTPN21Q16825 1174 aa15.75■□□□□ 0.11
CD48-203ENST00000613788 FIGNQ5HY92 759 aa15.75■□□□□ 0.11
CD48-203ENST00000613788 PRPF38BQ5VTL8 546 aaKnown RBP15.75■□□□□ 0.11
CD48-203ENST00000613788 DPY19L2P1Q6NXN4 242 aa15.75■□□□□ 0.11
CD48-203ENST00000613788 RRAGAQ7L523 313 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms